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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034978 through 18771 annotations produced 1 hits



(CG3257):

Annotation Number : CG3257
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034978
Gbrowse : chr2R:20004311-20010793 (+) // 100.0 //
Probeset : 1641083_at
Accessions : protein= NP_001033970; /// NP_611887;, nucleotide= NM_001038881; /// NM_138043;
FlyMine data for FBgn0034978.
BDGP gene expression has embryonic in situ data for CG3257: 14 pix of staining in 4 body parts.
TRiP has 1 RNAi stocks for FBgn0034978 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034978 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1386 ± 164 of 436.20Up
Head320 ± 154 of 4 8.40Up
Eye236 ± 244 of 4 6.17Up
Thoracicoabdominal ganglion1021 ± 254 of 426.70Up
Salivary gland10 ± 50 of 4 0.26Down
Crop3 ± 10 of 4 0.10Down
Midgut3 ± 10 of 4 0.10Down
Tubule3 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.00Down
Heart8 ± 13 of 4 0.22Down
Fat body6 ± 20 of 4 0.16Down
Ovary0 ± 00 of 4 0.00Down
Testis3 ± 10 of 4 0.10Down
Male accessory glands6 ± 00 of 4 0.20Down
Virgin spermatheca3 ± 10 of 4 0.10Down
Mated spermatheca2 ± 10 of 4 0.07Down
Adult carcass23 ± 12 of 4 0.60Down
Larval CNS416 ± 234 of 410.87Up
Larval Salivary gland7 ± 11 of 4 0.19Down
Larval midgut5 ± 20 of 4 0.13Down
Larval tubule5 ± 00 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.03Down
Larval fat body3 ± 11 of 4 0.10Down
Larval trachea7 ± 52 of 4 0.20Down
Larval carcass7 ± 13 of 4 0.20Down
S2 cells (growing)2 ± 00 of 4 0.08Down
Whole fly38 ± 24 of 4

Looking for FBgn0034978. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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