Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034982 through 18771 annotations produced 1 hits



/// (CG4065 /// DmirCG4065):

Annotation Number : CG4065
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034982
Gbrowse : chr2R:20022695-20025561 (-) // 100.0 //
Probeset : 1640055_at
Accessions : protein= NP_001014546; /// NP_611891;, nucleotide= NM_001014546; /// NM_138047;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or struct
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034982.
BDGP gene expression has embryonic in situ data for CG4065: 11 pix of staining in 11 body parts.
BioGrid reports that CG4065 interacts with CG5009 .
VDRC has 2 RNAi stocks for FBgn0034982 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain131 34 of 4 1.10None
Head86 54 of 4 0.70Down
Eye85 34 of 4 0.68Down
Thoracicoabdominal ganglion133 74 of 4 1.10None
Salivary gland58 54 of 4 0.47Down
Crop69 24 of 4 0.60Down
Midgut49 34 of 4 0.40Down
Tubule93 24 of 4 0.70Down
Hindgut68 24 of 4 0.50Down
Heart68 24 of 4 0.54Down
Fat body82 74 of 4 0.66Down
Ovary216 54 of 4 1.70Up
Testis247 94 of 4 2.00Up
Male accessory glands145 34 of 4 1.20Up
Virgin spermatheca99 34 of 4 0.80Down
Mated spermatheca113 54 of 4 0.91None
Adult carcass81 34 of 4 0.60Down
Larval CNS199 214 of 4 1.59Up
Larval Salivary gland129 34 of 4 1.04None
Larval midgut74 44 of 4 0.59Down
Larval tubule86 54 of 4 0.70Down
Larval hindgut115 44 of 4 0.92None
Larval fat body161 94 of 4 1.30Up
Larval trachea98 114 of 4 0.79Down
Larval carcass102 94 of 4 0.82None
S2 cells (growing)119 24 of 4 0.96None
Whole fly125 34 of 4

Looking for FBgn0034982. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime