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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034985 through 18771 annotations produced 1 hits



(CG3328):

Annotation Number : CG3328
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034985
Gbrowse : chr2R:20050012-20061137 (+) // 99.73 //
Probeset : 1628666_at
Accessions : protein= NP_611893;, nucleotide= NM_138049;
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation
FlyMine data for FBgn0034985.
BDGP gene expression has embryonic in situ data for CG3328: 42 pix of staining in 8 body parts.
VDRC has 1 RNAi stocks for FBgn0034985 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain153 ± 44 of 4 5.40Up
Head108 ± 64 of 4 3.80Up
Eye67 ± 44 of 4 2.36Up
Thoracicoabdominal ganglion196 ± 84 of 4 6.80Up
Salivary gland14 ± 40 of 4 0.50None
Crop64 ± 64 of 4 2.30Up
Midgut5 ± 20 of 4 0.20Down
Tubule2 ± 00 of 4 0.10Down
Hindgut62 ± 24 of 4 2.20Up
Heart365 ± 114 of 412.76Up
Fat body33 ± 80 of 4 1.16None
Ovary2 ± 10 of 4 0.10Down
Testis35 ± 24 of 4 1.20None
Male accessory glands3 ± 00 of 4 0.10Down
Virgin spermatheca21 ± 11 of 4 0.75Down
Mated spermatheca21 ± 10 of 4 0.77Down
Adult carcass77 ± 164 of 4 2.70None
Larval CNS52 ± 64 of 4 1.85Up
Larval Salivary gland8 ± 10 of 4 0.28Down
Larval midgut6 ± 30 of 4 0.21Down
Larval tubule11 ± 10 of 4 0.40Down
Larval hindgut352 ± 314 of 412.32Up
Larval fat body26 ± 21 of 4 0.90None
Larval trachea97 ± 194 of 4 3.39Up
Larval carcass199 ± 204 of 4 6.99Up
S2 cells (growing)2 ± 00 of 4 0.08Down
Whole fly28 ± 11 of 4

Looking for FBgn0034985. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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