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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034990 through 18771 annotations produced 1 hits



(CG11406):

Annotation Number : CG11406
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034990
Gbrowse : chr2R:20089783-20094439 (-) // 100.0 //
Probeset : 1626791_at
Accessions : protein= NP_001014548; /// NP_001163290; /// NP_611897;, nucleotide= NM_001014548; /// NM_001169819; /// NM_138053;
Interpro : 0004806 // triglyceride lipase activity // inferred from sequence or structural similarity /// 0004806 // triglyceride l
FlyMine data for FBgn0034990.
BDGP gene expression has embryonic in situ data for CG11406: 4 pix of staining in 1 body parts.
Homophila reports that CG11406 is a close match (1e-41) to human gene LIPA (NP_000226), a gene associated with Cholesteryl ester storage disease (3);Wolman disease (3).
VDRC has 2 RNAi stocks for FBgn0034990 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 12 of 4 3.00Up
Head2 ± 10 of 4 0.90None
Eye5 ± 11 of 4 2.26None
Thoracicoabdominal ganglion4 ± 11 of 4 1.80None
Salivary gland13 ± 30 of 4 5.35Up
Crop2 ± 00 of 4 0.80None
Midgut1 ± 00 of 4 0.40None
Tubule3 ± 00 of 4 1.20None
Hindgut1 ± 00 of 4 0.40None
Heart2 ± 00 of 4 0.79None
Fat body1 ± 10 of 4 0.75None
Ovary0 ± 00 of 4 0.30None
Testis4 ± 11 of 4 1.80None
Male accessory glands1 ± 00 of 4 0.60None
Virgin spermatheca1 ± 00 of 4 0.58None
Mated spermatheca1 ± 00 of 4 0.67None
Adult carcass3 ± 10 of 4 1.20None
Larval CNS3 ± 10 of 4 1.20None
Larval Salivary gland18 ± 34 of 4 7.14Up
Larval midgut2 ± 10 of 4 0.93None
Larval tubule2 ± 00 of 4 1.10None
Larval hindgut1 ± 00 of 4 0.60None
Larval fat body4 ± 10 of 4 1.60None
Larval trachea2 ± 20 of 4 0.93None
Larval carcass2 ± 10 of 4 1.05None
S2 cells (growing)1 ± 00 of 4 0.48None
Whole fly2 ± 00 of 4

Looking for FBgn0034990. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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