Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0034996 through 18771 annotations produced 2 hits



chr2R:20142911-20144683 (+) // 100.0 // ( /// ):

Annotation Number : CG13575
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1634585_at
Accessions : protein= , nucleotide= NP_611903;
Pathway : 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein
Interpro : 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred f
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 1.00None
Head4 10 of 4 1.10None
Eye1 00 of 4 0.36None
Thoracicoabdominal ganglion1 00 of 4 0.30Down
Salivary gland9 50 of 4 2.17None
Crop6 20 of 4 1.40None
Midgut4 10 of 4 1.10None
Tubule4 00 of 4 1.00None
Hindgut4 10 of 4 0.90None
Heart6 21 of 4 1.42None
Fat body7 30 of 4 1.56None
Ovary2 10 of 4 0.40None
Testis3 00 of 4 0.80None
Male accessory glands5 20 of 4 1.20None
Virgin spermatheca8 10 of 4 1.85None
Mated spermatheca6 20 of 4 1.47None
Adult carcass11 20 of 4 2.60Up
Larval CNS2 20 of 4 0.62None
Larval Salivary gland6 10 of 4 1.40None
Larval midgut8 02 of 4 1.92Up
Larval tubule3 10 of 4 0.80None
Larval hindgut3 10 of 4 0.66None
Larval fat body32 44 of 4 7.30Up
Larval trachea2 10 of 4 0.49None
Larval carcass8 10 of 4 1.89None
S2 cells (growing)4 00 of 4 1.04None
Whole fly4 00 of 4



/// /// nord (CG13575 /// DmirCG13575 /// nord):

Annotation Number : CG30418
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034996 /// FBgn0050418
Gbrowse : chr2R:20130785-20142616 (+) // 100.0 //
Probeset : 1636742_at
Accessions : protein= NP_611900;, nucleotide= NM_138056;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : "0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferr
FlyMine data for FBgn0034996 /// FBgn0050418.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain260 94 of 4 8.70Up
Head61 34 of 4 2.00Up
Eye7 02 of 4 0.26Down
Thoracicoabdominal ganglion873 364 of 429.10Up
Salivary gland11 40 of 4 0.39Down
Crop3 10 of 4 0.10Down
Midgut4 10 of 4 0.10Down
Tubule4 10 of 4 0.20Down
Hindgut5 10 of 4 0.20Down
Heart10 04 of 4 0.36Down
Fat body7 10 of 4 0.24Down
Ovary24 14 of 4 0.80None
Testis23 24 of 4 0.80None
Male accessory glands5 10 of 4 0.20Down
Virgin spermatheca5 01 of 4 0.20Down
Mated spermatheca8 02 of 4 0.27Down
Adult carcass14 21 of 4 0.50Down
Larval CNS183 184 of 4 6.12Up
Larval Salivary gland5 10 of 4 0.19Down
Larval midgut6 10 of 4 0.23Down
Larval tubule2 10 of 4 0.10Down
Larval hindgut6 01 of 4 0.22Down
Larval fat body15 12 of 4 0.50Down
Larval trachea6 12 of 4 0.22Down
Larval carcass25 14 of 4 0.83None
S2 cells (growing)1 00 of 4 0.06Down
Whole fly30 24 of 4

Looking for FBgn0034996. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime