FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0034998 through 18771 annotations produced 1 hits

(CG13577):

Annotation Number : CG13577
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034998
Gbrowse : chr2R:20155202-20156481 (-) // 100.0 //
Probeset : 1628038_at
Accessions : protein= NP_611905;, nucleotide= NM_138061;
FlyMine data for FBgn0034998.
VDRC has 1 RNAi stocks for FBgn0034998 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	6 ± 1	1 of 4	0.30	Down
Head	8 ± 1	0 of 4	0.40	Down
Eye	5 ± 1	2 of 4	0.27	Down
Thoracicoabdominal ganglion	5 ± 1	0 of 4	0.30	Down
Salivary gland	13 ± 3	0 of 4	0.60	None
Crop	9 ± 2	1 of 4	0.50	Down
Midgut	16 ± 0	1 of 4	0.80	Down
Tubule	7 ± 1	0 of 4	0.30	Down
Hindgut	8 ± 1	1 of 4	0.40	Down
Heart	5 ± 0	0 of 4	0.23	Down
Fat body	9 ± 2	2 of 4	0.46	Down
Ovary	5 ± 1	1 of 4	0.20	Down
Testis	193 ± 10	4 of 4	9.00	Up
Male accessory glands	6 ± 2	0 of 4	0.30	Down
Virgin spermatheca	11 ± 1	3 of 4	0.53	Down
Mated spermatheca	8 ± 1	1 of 4	0.39	Down
Adult carcass	12 ± 3	0 of 4	0.60	None
Larval CNS	6 ± 1	1 of 4	0.29	Down
Larval Salivary gland	13 ± 2	2 of 4	0.62	None
Larval midgut	13 ± 1	4 of 4	0.62	Down
Larval tubule	13 ± 3	1 of 4	0.60	None
Larval hindgut	9 ± 1	3 of 4	0.45	Down
Larval fat body	36 ± 9	3 of 4	1.70	None
Larval trachea	6 ± 3	2 of 4	0.32	Down
Larval carcass	11 ± 1	2 of 4	0.54	Down
S2 cells (growing)	9 ± 1	3 of 4	0.43	Down
Whole fly	21 ± 1	4 of 4

Looking for FBgn0034998. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720