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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035000 through 18771 annotations produced 1 hits



(CG13578):

Annotation Number : CG13578
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035000
Gbrowse : chr2R:20265658-20266142 (+) // 100.0 //
Probeset : 1628533_at
Accessions : protein= NP_611907;, nucleotide= NM_138063;
FlyMine data for FBgn0035000.
VDRC has 4 RNAi stocks for FBgn0035000 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 4.20None
Head24 ± 24 of 418.60Up
Eye1 ± 00 of 4 1.13None
Thoracicoabdominal ganglion5 ± 20 of 4 3.80None
Salivary gland2 ± 10 of 4 1.66None
Crop2 ± 00 of 4 1.50None
Midgut0 ± 00 of 4 0.50None
Tubule3 ± 10 of 4 2.90None
Hindgut1 ± 00 of 4 1.10None
Heart1 ± 10 of 4 1.42None
Fat body0 ± 00 of 4 0.62None
Ovary0 ± 00 of 4 0.50None
Testis2 ± 10 of 4 1.60None
Male accessory glands0 ± 00 of 4 0.70None
Virgin spermatheca0 ± 00 of 4 0.47None
Mated spermatheca1 ± 00 of 4 0.72None
Adult carcass8 ± 30 of 4 6.20None
Larval CNS1 ± 10 of 4 1.13None
Larval Salivary gland1 ± 00 of 4 1.26None
Larval midgut0 ± 00 of 4 0.64None
Larval tubule6 ± 10 of 4 4.50None
Larval hindgut2 ± 10 of 4 2.04None
Larval fat body2 ± 00 of 4 2.00None
Larval trachea0 ± 00 of 4 0.55None
Larval carcass3 ± 10 of 4 2.75None
S2 cells (growing)1 ± 00 of 4 0.89None
Whole fly1 ± 00 of 4

Looking for FBgn0035000. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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