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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035001 through 18771 annotations produced 2 hits



polo kinase kinase 1 (slik):

Annotation Number : CG4527
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035001
Gbrowse : chr2R:20279651-20290211 (-) // 100.0 //
Probeset : 1623189_at
Accessions : protein= NP_001014549; /// NP_001137752; /// NP_611908; /// NP_726441; /// NP_995935; /// NP_995936;, nucleotide= NM_001014549; /// NM_001144280; /// NM_138064; /// NM_166669; /// NM_206213; /// NM_206214;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0035001.
Homophila reports that CG4527 is a close match (6e-11) to human gene ANKK1 (NP_848605), a gene associated with Dopamine receptor D2, reduced brain density of (3).
TRiP has 1 RNAi stocks for FBgn0035001 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035001 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain511 ± 154 of 4 1.80Up
Head334 ± 94 of 4 1.20Up
Eye711 ± 344 of 4 2.51Up
Thoracicoabdominal ganglion387 ± 164 of 4 1.40Up
Salivary gland718 ± 114 of 4 2.53Up
Crop496 ± 144 of 4 1.70Up
Midgut422 ± 84 of 4 1.50Up
Tubule614 ± 164 of 4 2.20Up
Hindgut582 ± 184 of 4 2.10Up
Heart338 ± 84 of 4 1.19Up
Fat body262 ± 184 of 4 0.92None
Ovary556 ± 24 of 4 2.00Up
Testis180 ± 144 of 4 0.60Down
Male accessory glands432 ± 164 of 4 1.50Up
Virgin spermatheca309 ± 124 of 4 1.09None
Mated spermatheca319 ± 114 of 4 1.13None
Adult carcass303 ± 334 of 4 1.10None
Larval CNS483 ± 254 of 4 1.70Up
Larval Salivary gland449 ± 234 of 4 1.59Up
Larval midgut414 ± 114 of 4 1.46Up
Larval tubule391 ± 114 of 4 1.40Up
Larval hindgut512 ± 54 of 4 1.81Up
Larval fat body210 ± 64 of 4 0.70Down
Larval trachea383 ± 194 of 4 1.35Up
Larval carcass367 ± 84 of 4 1.30Up
S2 cells (growing)1036 ± 144 of 4 3.65Up
Whole fly283 ± 144 of 4



polo kinase kinase 1 (slik):

Annotation Number : CG4527
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035001
Gbrowse : chr2R:20282945-20290211 (-) // 100.0 //
Probeset : 1633461_at
Accessions : protein= NP_001014549; /// NP_001137752; /// NP_611908; /// NP_726441; /// NP_995935; /// NP_995936;, nucleotide= NM_001014549; /// NM_001144280; /// NM_138064; /// NM_166669; /// NM_206213; /// NM_206214;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0035001.
Homophila reports that CG4527 is a close match (6e-11) to human gene ANKK1 (NP_848605), a gene associated with Dopamine receptor D2, reduced brain density of (3).
TRiP has 1 RNAi stocks for FBgn0035001 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035001 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 20 of 4 3.40None
Head2 ± 00 of 4 0.90None
Eye29 ± 33 of 412.68Up
Thoracicoabdominal ganglion3 ± 10 of 4 1.40None
Salivary gland9 ± 40 of 4 3.94None
Crop1 ± 00 of 4 0.50None
Midgut4 ± 10 of 4 2.10None
Tubule15 ± 11 of 4 6.80Up
Hindgut7 ± 40 of 4 3.20None
Heart28 ± 34 of 412.10Up
Fat body22 ± 131 of 4 9.70None
Ovary1 ± 00 of 4 0.40None
Testis0 ± 00 of 4 0.30None
Male accessory glands3 ± 20 of 4 1.50None
Virgin spermatheca11 ± 00 of 4 4.87Up
Mated spermatheca16 ± 43 of 4 6.99Up
Adult carcass1 ± 00 of 4 0.80None
Larval CNS11 ± 43 of 4 4.78Up
Larval Salivary gland2 ± 00 of 4 1.09None
Larval midgut2 ± 00 of 4 1.09None
Larval tubule2 ± 10 of 4 1.20None
Larval hindgut2 ± 10 of 4 0.99None
Larval fat body5 ± 20 of 4 2.20None
Larval trachea35 ± 101 of 415.11Up
Larval carcass4 ± 10 of 4 1.78None
S2 cells (growing)13 ± 12 of 4 5.62Up
Whole fly2 ± 10 of 4

Looking for FBgn0035001. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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