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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035003 through 18771 annotations produced 1 hits



(CG15873):

Annotation Number : CG15873
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035003
Gbrowse : chr2R:20316987-20318008 (-) // 100.0 //
Probeset : 1630460_at
Accessions : protein= NP_611910;, nucleotide= NM_138066;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0035003.
BDGP gene expression has embryonic in situ data for CG15873: 4 pix of staining in 1 body parts.
Homophila reports that CG15873 is a close match (7e-11) to human gene FSAP;HABP2;HGFAL;PHBP (NP_004123), a gene associated with {Carotid stenosis, susceptibility to} (3);{Venous thromboembolism, susceptibility to}, 188050 (3).
VDRC has 1 RNAi stocks for FBgn0035003 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head1 ± 00 of 4 0.10Down
Eye1 ± 00 of 4 0.11Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.20Down
Salivary gland9 ± 21 of 4 0.57None
Crop5 ± 21 of 4 0.30Down
Midgut1 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.10Down
Hindgut2 ± 10 of 4 0.10Down
Heart2 ± 00 of 4 0.14Down
Fat body2 ± 11 of 4 0.16Down
Ovary1 ± 00 of 4 0.10Down
Testis220 ± 114 of 412.90Up
Male accessory glands4 ± 10 of 4 0.30Down
Virgin spermatheca2 ± 00 of 4 0.16Down
Mated spermatheca4 ± 10 of 4 0.27Down
Adult carcass4 ± 20 of 4 0.30Down
Larval CNS3 ± 21 of 4 0.20Down
Larval Salivary gland3 ± 10 of 4 0.22Down
Larval midgut3 ± 00 of 4 0.17Down
Larval tubule3 ± 10 of 4 0.20Down
Larval hindgut3 ± 00 of 4 0.20Down
Larval fat body30 ± 153 of 4 1.80None
Larval trachea1 ± 10 of 4 0.12Down
Larval carcass3 ± 10 of 4 0.23Down
S2 cells (growing)3 ± 11 of 4 0.21Down
Whole fly17 ± 04 of 4

Looking for FBgn0035003. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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