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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035005 through 18771 annotations produced 1 hits



(CG3483):

Annotation Number : CG3483
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035005
Gbrowse : chr2R:20333022-20334367 (+) // 100.0 //
Probeset : 1640461_at
Accessions : protein= NP_611912;, nucleotide= NM_138068;
Pathway : 0005759 // mitochondrial matrix // inferred from sequence or structural similarity
Interpro : "0000287 // magnesium ion binding // inferred from electronic annotation /// 0004449 // isocitrate dehydrogenase (NAD+)
FlyMine data for FBgn0035005.
VDRC has 3 RNAi stocks for FBgn0035005 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head7 ± 10 of 4 0.10Down
Eye9 ± 02 of 4 0.12Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.00Down
Salivary gland11 ± 31 of 4 0.14Down
Crop8 ± 01 of 4 0.10Down
Midgut4 ± 20 of 4 0.10Down
Tubule8 ± 10 of 4 0.10Down
Hindgut5 ± 10 of 4 0.10Down
Heart5 ± 11 of 4 0.07Down
Fat body3 ± 30 of 4 0.04Down
Ovary2 ± 00 of 4 0.00Down
Testis896 ± 194 of 411.20Up
Male accessory glands9 ± 40 of 4 0.10Down
Virgin spermatheca6 ± 21 of 4 0.08Down
Mated spermatheca9 ± 10 of 4 0.12Down
Adult carcass11 ± 50 of 4 0.10Down
Larval CNS4 ± 20 of 4 0.06Down
Larval Salivary gland14 ± 42 of 4 0.18Down
Larval midgut4 ± 10 of 4 0.05Down
Larval tubule6 ± 20 of 4 0.10Down
Larval hindgut8 ± 10 of 4 0.10Down
Larval fat body66 ± 313 of 4 0.80None
Larval trachea5 ± 61 of 4 0.07Down
Larval carcass10 ± 10 of 4 0.14Down
S2 cells (growing)4 ± 10 of 4 0.05Down
Whole fly80 ± 24 of 4

Looking for FBgn0035005. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime