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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035006 through 18771 annotations produced 1 hits



(CG4563):

Annotation Number : CG4563
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035006
Gbrowse : chr2R:20338604-20340560 (-) // 100.0 //
Probeset : 1631496_at
Accessions : protein= NP_611913;, nucleotide= NM_138069;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from phy
FlyMine data for FBgn0035006.
BDGP gene expression has embryonic in situ data for CG4563: 4 pix of staining in 1 body parts.
BioGrid reports that CG4563 interacts with CG8049 .
VDRC has 5 RNAi stocks for FBgn0035006 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.10Down
Head1 00 of 4 0.00Down
Eye0 00 of 4 0.02Down
Thoracicoabdominal ganglion3 10 of 4 0.10Down
Salivary gland4 00 of 4 0.08Down
Crop1 00 of 4 0.00Down
Midgut429 584 of 4 8.10Up
Tubule2 00 of 4 0.00Down
Hindgut1 00 of 4 0.00Down
Heart2 00 of 4 0.05Down
Fat body2 20 of 4 0.05Down
Ovary2 00 of 4 0.00Down
Testis71 34 of 4 1.30None
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca1 00 of 4 0.04Down
Mated spermatheca4 20 of 4 0.08Down
Adult carcass3 10 of 4 0.10Down
Larval CNS2 20 of 4 0.05Down
Larval Salivary gland2 00 of 4 0.04Down
Larval midgut1250 1154 of 423.55Up
Larval tubule3 10 of 4 0.10Down
Larval hindgut1 00 of 4 0.03Down
Larval fat body12 31 of 4 0.20Down
Larval trachea4 70 of 4 0.09Down
Larval carcass1 00 of 4 0.02Down
S2 cells (growing)2 00 of 4 0.05Down
Whole fly53 104 of 4

Looking for FBgn0035006. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime