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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035008 through 18771 annotations produced 1 hits



(CG3494):

Annotation Number : CG3494
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035008
Gbrowse : chr2R:20361821-20362704 (+) // 100.0 //
Probeset : 1626829_s_at
Accessions : protein= NP_611915; /// NP_726449;, nucleotide= NM_138071; /// NM_166673;
Pathway : engulfment // inferred from mutant phenotype"
FlyMine data for FBgn0035008.
Homophila reports that CG3494 is a close match (2e-11) to human gene LRRC8;KIAA1437 (NP_062540), a gene associated with Agammaglobulinemia, non-Bruton type, 601495 (3).
TRiP has 1 RNAi stocks for FBgn0035008 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035008 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 21 of 4 0.10Down
Head11 13 of 4 0.10Down
Eye3 00 of 4 0.03Down
Thoracicoabdominal ganglion9 10 of 4 0.10Down
Salivary gland23 40 of 4 0.23Down
Crop6 20 of 4 0.10Down
Midgut14 31 of 4 0.10Down
Tubule9 10 of 4 0.10Down
Hindgut14 24 of 4 0.10Down
Heart5 00 of 4 0.05Down
Fat body15 62 of 4 0.15Down
Ovary5 00 of 4 0.10Down
Testis1027 404 of 410.20Up
Male accessory glands14 30 of 4 0.10Down
Virgin spermatheca9 13 of 4 0.09Down
Mated spermatheca6 00 of 4 0.06Down
Adult carcass19 23 of 4 0.20Down
Larval CNS5 20 of 4 0.05Down
Larval Salivary gland10 40 of 4 0.10Down
Larval midgut15 32 of 4 0.15Down
Larval tubule6 10 of 4 0.10Down
Larval hindgut11 32 of 4 0.11Down
Larval fat body127 694 of 4 1.30None
Larval trachea9 52 of 4 0.10Down
Larval carcass14 11 of 4 0.14Down
S2 cells (growing)6 10 of 4 0.07Down
Whole fly101 34 of 4

Looking for FBgn0035008. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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