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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035010 through 18771 annotations produced 1 hits



chr2R:20370569-20377168 (+) // 100.0 // ():

Annotation Number : CG13579
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1626573_at
Accessions : protein= , nucleotide= NP_611917;
Pathway : 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007186 // G-
Interpro : 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred f
Homophila reports that CG13579 is a close match (7e-13) to human gene ADRB2 (NP_000015), a gene associated with Beta-2-adrenoreceptor agonist, reduced response to (3);{Asthma, nocturnal, susceptibility to}, 600807 (3);{Obesity, susceptibility to}, 601665 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 14 of 410.00Up
Head3 10 of 4 2.30None
Eye2 10 of 4 1.46None
Thoracicoabdominal ganglion13 13 of 4 8.50Up
Salivary gland5 10 of 4 3.36None
Crop1 00 of 4 1.10None
Midgut4 20 of 4 2.80None
Tubule3 00 of 4 2.10Up
Hindgut5 10 of 4 3.30None
Heart0 00 of 4 0.44None
Fat body1 00 of 4 0.85None
Ovary1 00 of 4 0.80None
Testis0 00 of 4 0.50None
Male accessory glands2 00 of 4 1.40None
Virgin spermatheca3 00 of 4 1.98Up
Mated spermatheca2 10 of 4 1.79None
Adult carcass4 31 of 4 3.20None
Larval CNS3 20 of 4 2.05None
Larval Salivary gland4 20 of 4 3.03None
Larval midgut1 00 of 4 1.07None
Larval tubule1 00 of 4 0.80None
Larval hindgut3 10 of 4 2.41None
Larval fat body10 30 of 4 7.10None
Larval trachea1 10 of 4 1.15None
Larval carcass3 10 of 4 2.56None
S2 cells (growing)0 00 of 4 0.43None
Whole fly1 00 of 4

Looking for FBgn0035010. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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