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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035012 through 18771 annotations produced 1 hits



(CG13590):

Annotation Number : CG13590
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035012
Gbrowse : chr2R:20380778-20381471 (-) // 100.0 //
Probeset : 1625498_at
Accessions : protein= NP_611919;, nucleotide= NM_138075;
FlyMine data for FBgn0035012.
VDRC has 3 RNAi stocks for FBgn0035012 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.90None
Head2 10 of 4 0.60None
Eye1 00 of 4 0.35None
Thoracicoabdominal ganglion2 00 of 4 0.80None
Salivary gland6 20 of 4 1.80None
Crop3 10 of 4 1.00None
Midgut2 10 of 4 0.70None
Tubule1 00 of 4 0.50Down
Hindgut3 10 of 4 1.00None
Heart0 00 of 4 0.21None
Fat body3 10 of 4 0.87None
Ovary1 00 of 4 0.30None
Testis2 00 of 4 0.50None
Male accessory glands3 10 of 4 1.00None
Virgin spermatheca0 00 of 4 0.08Down
Mated spermatheca0 00 of 4 0.19None
Adult carcass1 00 of 4 0.40None
Larval CNS2 20 of 4 0.61None
Larval Salivary gland3 00 of 4 0.79None
Larval midgut1 00 of 4 0.48None
Larval tubule2 10 of 4 0.80None
Larval hindgut0 00 of 4 0.14None
Larval fat body0 00 of 4 0.20None
Larval trachea0 00 of 4 0.22None
Larval carcass1 00 of 4 0.40None
S2 cells (growing)2 10 of 4 0.75None
Whole fly3 10 of 4

Looking for FBgn0035012. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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