Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035016 through 18771 annotations produced 1 hits



(CG4612):

Annotation Number : CG4612
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035016
Gbrowse : chr2R:20411206-20413617 (-) // 100.0 //
Probeset : 1627151_at
Accessions : protein= NP_611924;, nucleotide= NM_138080;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0035016.
BDGP gene expression has embryonic in situ data for CG4612: 12 pix of staining in 12 body parts.
BioGrid reports that CG4612 interacts with CG5203 .
VDRC has 1 RNAi stocks for FBgn0035016 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain703 94 of 4 5.50Up
Head154 114 of 4 1.20None
Eye293 244 of 4 2.29Up
Thoracicoabdominal ganglion653 554 of 4 5.10Up
Salivary gland46 74 of 4 0.36Down
Crop125 24 of 4 1.00None
Midgut35 14 of 4 0.30Down
Tubule28 14 of 4 0.20Down
Hindgut78 34 of 4 0.60Down
Heart129 54 of 4 1.01None
Fat body68 104 of 4 0.53Down
Ovary258 84 of 4 2.00Up
Testis16 14 of 4 0.10Down
Male accessory glands51 34 of 4 0.40Down
Virgin spermatheca39 24 of 4 0.30Down
Mated spermatheca32 34 of 4 0.25Down
Adult carcass86 154 of 4 0.70None
Larval CNS424 514 of 4 3.31Up
Larval Salivary gland66 34 of 4 0.52Down
Larval midgut48 24 of 4 0.37Down
Larval tubule74 54 of 4 0.60Down
Larval hindgut65 24 of 4 0.51Down
Larval fat body61 44 of 4 0.50Down
Larval trachea207 194 of 4 1.62Up
Larval carcass95 64 of 4 0.74Down
S2 cells (growing)142 54 of 4 1.11None
Whole fly128 74 of 4

Looking for FBgn0035016. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime