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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035019 through 18771 annotations produced 1 hits

CG13592 (Ir60e):

Annotation Number : CG13592
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035019
Gbrowse : chr2R:20417139-20418720 (-) // 100.0 //
Probeset : 1637711_at
Accessions : protein= NP_611927;, nucleotide= NM_138083;
FlyMine data for FBgn0035019.
VDRC has 3 RNAi stocks for FBgn0035019 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 11 of 4 2.40None
Head2 10 of 4 1.80None
Eye4 10 of 4 2.77None
Thoracicoabdominal ganglion2 10 of 4 1.90None
Salivary gland10 41 of 4 6.44None
Crop3 10 of 4 2.00None
Midgut2 10 of 4 1.70None
Tubule3 00 of 4 2.50Up
Hindgut2 00 of 4 1.40None
Heart0 00 of 4 0.32None
Fat body1 10 of 4 1.19None
Ovary1 00 of 4 1.20None
Testis4 01 of 4 2.60Up
Male accessory glands2 00 of 4 1.40None
Virgin spermatheca1 10 of 4 1.24None
Mated spermatheca1 00 of 4 1.21None
Adult carcass4 10 of 4 3.10None
Larval CNS1 10 of 4 1.16None
Larval Salivary gland2 10 of 4 1.63None
Larval midgut3 10 of 4 2.50None
Larval tubule4 10 of 4 2.70None
Larval hindgut2 01 of 4 1.60None
Larval fat body6 20 of 4 4.30None
Larval trachea1 10 of 4 1.11None
Larval carcass1 00 of 4 1.02None
S2 cells (growing)0 00 of 4 0.50None
Whole fly1 00 of 4

Looking for FBgn0035019. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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