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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035020 through 18771 annotations produced 1 hits



(CG13585):

Annotation Number : CG13585
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035020
Gbrowse : chr2R:20419121-20420908 (+) // 99.41 //
Probeset : 1624841_s_at
Accessions : protein= NP_001163291; /// NP_001163292; /// NP_611928; /// NP_726458;, nucleotide= NM_001169820; /// NM_001169821; /// NM_138084; /// NM_166676;
FlyMine data for FBgn0035020.
BDGP gene expression has embryonic in situ data for CG13585: 11 pix of staining in 2 body parts.
BioGrid reports that CG13585 interacts with CG14323 CG18806 CG9796 .
VDRC has 3 RNAi stocks for FBgn0035020 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain907 ± 24 of 4 1.60Up
Head1325 ± 484 of 4 2.40Up
Eye1697 ± 474 of 4 3.04Up
Thoracicoabdominal ganglion703 ± 154 of 4 1.30Up
Salivary gland5504 ± 1904 of 4 9.85Up
Crop743 ± 234 of 4 1.30Up
Midgut1297 ± 394 of 4 2.30Up
Tubule670 ± 384 of 4 1.20Up
Hindgut756 ± 274 of 4 1.40Up
Heart1399 ± 234 of 4 2.50Up
Fat body959 ± 724 of 4 1.72Up
Ovary216 ± 34 of 4 0.40Down
Testis592 ± 204 of 4 1.10None
Male accessory glands4293 ± 1304 of 4 7.70Up
Virgin spermatheca2799 ± 604 of 4 5.01Up
Mated spermatheca2478 ± 714 of 4 4.44Up
Adult carcass798 ± 294 of 4 1.40Up
Larval CNS344 ± 414 of 4 0.62Down
Larval Salivary gland1443 ± 754 of 4 2.58Up
Larval midgut1313 ± 654 of 4 2.35Up
Larval tubule991 ± 424 of 4 1.80Up
Larval hindgut422 ± 164 of 4 0.76Down
Larval fat body1460 ± 1144 of 4 2.60Up
Larval trachea453 ± 614 of 4 0.81None
Larval carcass517 ± 304 of 4 0.93None
S2 cells (growing)473 ± 234 of 4 0.85None
Whole fly558 ± 344 of 4

Looking for FBgn0035020. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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