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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035026 through 18771 annotations produced 1 hits



CG12252 (Fcp1):

Annotation Number : CG12252
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035026
Gbrowse : chr2R:20455509-20459106 (-) // 100.0 //
Probeset : 1623820_at
Accessions : protein= NP_611934;, nucleotide= NM_138090;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0008420 // CTD phosphatase act
FlyMine data for FBgn0035026.
Homophila reports that CG12252 is a close match (2e-70) to human gene CCFDN;CTDP1;FCP1 (NP_004706), a gene associated with Congenital cataracts, facial dysmorphism, and neuropathy, 604168 (3).
TRiP has 1 RNAi stocks for FBgn0035026 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035026 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain300 64 of 4 2.20Up
Head120 64 of 4 0.90None
Eye109 74 of 4 0.81Down
Thoracicoabdominal ganglion275 64 of 4 2.10Up
Salivary gland72 24 of 4 0.54Down
Crop55 24 of 4 0.40Down
Midgut52 44 of 4 0.40Down
Tubule58 54 of 4 0.40Down
Hindgut49 14 of 4 0.40Down
Heart44 14 of 4 0.33Down
Fat body55 24 of 4 0.41Down
Ovary338 44 of 4 2.50Up
Testis34 14 of 4 0.30Down
Male accessory glands48 34 of 4 0.40Down
Virgin spermatheca88 84 of 4 0.66Down
Mated spermatheca83 54 of 4 0.63Down
Adult carcass58 54 of 4 0.40Down
Larval CNS230 114 of 4 1.71Up
Larval Salivary gland93 74 of 4 0.69Down
Larval midgut63 44 of 4 0.47Down
Larval tubule101 44 of 4 0.80Down
Larval hindgut70 44 of 4 0.52Down
Larval fat body108 74 of 4 0.80Down
Larval trachea106 54 of 4 0.80Down
Larval carcass61 34 of 4 0.46Down
S2 cells (growing)120 34 of 4 0.90None
Whole fly134 54 of 4

Looking for FBgn0035026. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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