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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035028 through 18771 annotations produced 1 hits



Start1 (Start1):

Annotation Number : CG3522
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035028
Gbrowse : chr2R:20462099-20465199 (+) // 100.0 //
Probeset : 1625637_at
Accessions : protein= NP_611936; /// NP_995939;, nucleotide= NM_138092; /// NM_206217;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0015485 // cholesterol binding // inferred from seq
FlyMine data for FBgn0035028.
BDGP gene expression has embryonic in situ data for CG3522: 14 pix of staining in 8 body parts.
Homophila reports that CG3522 is a close match (5e-14) to human gene STAR (NP_000340), a gene associated with Lipoid adrenal hyperplasia, 201710 (3).
BioGrid reports that CG3522 interacts with CG8417 .
VDRC has 2 RNAi stocks for FBgn0035028 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain161 44 of 4 1.10None
Head108 54 of 4 0.70Down
Eye117 24 of 4 0.80Down
Thoracicoabdominal ganglion156 74 of 4 1.10None
Salivary gland189 34 of 4 1.28Up
Crop141 74 of 4 1.00None
Midgut211 24 of 4 1.40Up
Tubule129 64 of 4 0.90Down
Hindgut127 14 of 4 0.90Down
Heart142 44 of 4 0.97None
Fat body151 134 of 4 1.03None
Ovary267 54 of 4 1.80Up
Testis52 24 of 4 0.40Down
Male accessory glands220 64 of 4 1.50Up
Virgin spermatheca196 104 of 4 1.33Up
Mated spermatheca174 94 of 4 1.18None
Adult carcass114 64 of 4 0.80Down
Larval CNS166 184 of 4 1.13None
Larval Salivary gland191 84 of 4 1.30Up
Larval midgut488 414 of 4 3.32Up
Larval tubule481 64 of 4 3.30Up
Larval hindgut240 164 of 4 1.63Up
Larval fat body278 284 of 4 1.90Up
Larval trachea177 154 of 4 1.21Up
Larval carcass178 134 of 4 1.21None
S2 cells (growing)186 34 of 4 1.27Up
Whole fly147 24 of 4

Looking for FBgn0035028. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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