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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035031 through 18771 annotations produced 1 hits



(CG13587):

Annotation Number : CG13587
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035031
Gbrowse : chr2R:20485517-20486614 (+) // 100.0 //
Probeset : 1624424_at
Accessions : protein= NP_611939;, nucleotide= NM_138095;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0035031.
BioGrid reports that CG13587 interacts with CG9027 .
VDRC has 2 RNAi stocks for FBgn0035031 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.70None
Head3 00 of 4 1.20None
Eye4 01 of 4 1.64None
Thoracicoabdominal ganglion0 00 of 4 0.20Down
Salivary gland8 10 of 4 2.91Up
Crop5 20 of 4 1.90None
Midgut5 10 of 4 1.80None
Tubule3 00 of 4 1.10None
Hindgut4 10 of 4 1.60None
Heart1 00 of 4 0.37Down
Fat body2 10 of 4 0.84None
Ovary1 00 of 4 0.60None
Testis2 10 of 4 0.90None
Male accessory glands4 10 of 4 1.50None
Virgin spermatheca3 10 of 4 1.09None
Mated spermatheca4 10 of 4 1.53None
Adult carcass6 20 of 4 2.20None
Larval CNS1 00 of 4 0.48None
Larval Salivary gland6 20 of 4 2.23None
Larval midgut7 20 of 4 2.70None
Larval tubule4 10 of 4 1.50None
Larval hindgut4 10 of 4 1.57None
Larval fat body7 10 of 4 2.70Up
Larval trachea1 10 of 4 0.45None
Larval carcass7 11 of 4 2.66Up
S2 cells (growing)4 10 of 4 1.43None
Whole fly2 00 of 4

Looking for FBgn0035031. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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