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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035032 through 18771 annotations produced 1 hits



chr2R:20486607-20487344 (-) // 100.0 // ( /// ATP synthase):

Annotation Number : CG4692
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1638109_s_at
Accessions : protein= , nucleotide= NP_611940; /// NP_726463;
Pathway : 0006486 // protein glycosylation // inferred from direct assay /// 0006754 // ATP biosynthetic process // inferred from
Interpro : "0000276 // mitochondrial proton-transporting ATP synthase complex
FlyMine data for full length.
BioGrid reports that CG4692 interacts with CG5645 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2584 ± 554 of 4 0.90None
Head3330 ± 1294 of 4 1.20Up
Eye4272 ± 814 of 4 1.56Up
Thoracicoabdominal ganglion3149 ± 774 of 4 1.10Up
Salivary gland7204 ± 2104 of 4 2.63Up
Crop3309 ± 2014 of 4 1.20None
Midgut3430 ± 524 of 4 1.30Up
Tubule2604 ± 724 of 4 1.00None
Hindgut4343 ± 974 of 4 1.60Up
Heart4277 ± 2644 of 4 1.56Up
Fat body4248 ± 3504 of 4 1.55Up
Ovary1881 ± 384 of 4 0.70Down
Testis1483 ± 524 of 4 0.50Down
Male accessory glands2707 ± 1204 of 4 1.00None
Virgin spermatheca4426 ± 784 of 4 1.62Up
Mated spermatheca4316 ± 1384 of 4 1.58Up
Adult carcass5023 ± 2774 of 4 1.80Up
Larval CNS1949 ± 704 of 4 0.71Down
Larval Salivary gland4586 ± 1044 of 4 1.67Up
Larval midgut3932 ± 664 of 4 1.44Up
Larval tubule2793 ± 2154 of 4 1.00None
Larval hindgut3749 ± 454 of 4 1.37Up
Larval fat body1620 ± 864 of 4 0.60Down
Larval trachea2786 ± 1114 of 4 1.02None
Larval carcass3774 ± 3194 of 4 1.38Up
S2 cells (growing)2086 ± 54 of 4 0.76Down
Whole fly2740 ± 764 of 4

Looking for FBgn0035032. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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