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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035035 through 18771 annotations produced 1 hits



(CG3570):

Annotation Number : CG3570
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035035
Gbrowse : chr2R:20491134-20492194 (+) // 100.0 //
Probeset : 1626436_at
Accessions : protein= NP_611943;, nucleotide= NM_138099;
FlyMine data for FBgn0035035.
VDRC has 2 RNAi stocks for FBgn0035035 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain91 ± 04 of 4 0.80None
Head51 ± 14 of 4 0.40Down
Eye87 ± 24 of 4 0.74None
Thoracicoabdominal ganglion71 ± 14 of 4 0.60Down
Salivary gland125 ± 54 of 4 1.07None
Crop43 ± 24 of 4 0.40Down
Midgut87 ± 34 of 4 0.80None
Tubule48 ± 44 of 4 0.40Down
Hindgut62 ± 44 of 4 0.50Down
Heart61 ± 54 of 4 0.53Down
Fat body35 ± 44 of 4 0.30Down
Ovary196 ± 44 of 4 1.70Up
Testis49 ± 24 of 4 0.40Down
Male accessory glands185 ± 34 of 4 1.60Up
Virgin spermatheca38 ± 24 of 4 0.33Down
Mated spermatheca52 ± 44 of 4 0.44Down
Adult carcass35 ± 34 of 4 0.30Down
Larval CNS114 ± 64 of 4 0.98None
Larval Salivary gland133 ± 34 of 4 1.14None
Larval midgut59 ± 54 of 4 0.51Down
Larval tubule38 ± 14 of 4 0.30Down
Larval hindgut88 ± 34 of 4 0.76None
Larval fat body46 ± 44 of 4 0.40Down
Larval trachea149 ± 134 of 4 1.27None
Larval carcass67 ± 64 of 4 0.57Down
S2 cells (growing)170 ± 44 of 4 1.46Up
Whole fly117 ± 134 of 4

Looking for FBgn0035035. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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