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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035041 through 18771 annotations produced 1 hits



(CG13594):

Annotation Number : CG13594
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035041
Gbrowse : chr2R:20502943-20526110 (-) // 100.0 //
Probeset : 1630036_at
Accessions : protein= NP_611949;, nucleotide= NM_138105;
FlyMine data for FBgn0035041.
TRiP has 1 RNAi stocks for FBgn0035041 available for purchase.
VDRC has 1 RNAi stocks for FBgn0035041 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain365 124 of 417.30Up
Head80 44 of 4 3.80Up
Eye72 34 of 4 3.44Up
Thoracicoabdominal ganglion434 84 of 420.60Up
Salivary gland12 40 of 4 0.59None
Crop5 10 of 4 0.30Down
Midgut6 10 of 4 0.30Down
Tubule4 00 of 4 0.20Down
Hindgut20 24 of 4 1.00None
Heart7 14 of 4 0.34Down
Fat body7 40 of 4 0.35Down
Ovary1 00 of 4 0.10Down
Testis3 10 of 4 0.10Down
Male accessory glands79 74 of 4 3.80Up
Virgin spermatheca13 23 of 4 0.65Down
Mated spermatheca18 22 of 4 0.87None
Adult carcass6 00 of 4 0.30Down
Larval CNS129 144 of 4 6.15Up
Larval Salivary gland7 00 of 4 0.33Down
Larval midgut4 20 of 4 0.22Down
Larval tubule9 11 of 4 0.50Down
Larval hindgut4 10 of 4 0.20Down
Larval fat body273 244 of 412.90Up
Larval trachea3 21 of 4 0.18Down
Larval carcass4 10 of 4 0.19Down
S2 cells (growing)17 14 of 4 0.83None
Whole fly21 14 of 4

Looking for FBgn0035041. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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