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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035044 through 18771 annotations produced 1 hits



(CG3663):

Annotation Number : CG3663
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035044
Gbrowse : chr2R:20549046-20549940 (+) // 100.0 //
Probeset : 1626886_at
Accessions : protein= NP_611952;, nucleotide= NM_138108;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from phy
FlyMine data for FBgn0035044.
VDRC has 2 RNAi stocks for FBgn0035044 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain26 14 of 4 0.10Down
Head273 134 of 4 1.20None
Eye133 64 of 4 0.57Down
Thoracicoabdominal ganglion42 14 of 4 0.20Down
Salivary gland218 114 of 4 0.93None
Crop312 134 of 4 1.30Up
Midgut406 124 of 4 1.70Up
Tubule256 64 of 4 1.10Up
Hindgut323 94 of 4 1.40Up
Heart517 54 of 4 2.20Up
Fat body719 684 of 4 3.05Up
Ovary206 34 of 4 0.90Down
Testis12 01 of 4 0.10Down
Male accessory glands189 34 of 4 0.80Down
Virgin spermatheca754 234 of 4 3.20Up
Mated spermatheca766 384 of 4 3.25Up
Adult carcass434 334 of 4 1.80Up
Larval CNS107 44 of 4 0.45Down
Larval Salivary gland284 54 of 4 1.21Up
Larval midgut307 224 of 4 1.30Up
Larval tubule263 84 of 4 1.10None
Larval hindgut258 174 of 4 1.10None
Larval fat body175 174 of 4 0.70Down
Larval trachea190 94 of 4 0.81Down
Larval carcass204 174 of 4 0.87None
S2 cells (growing)159 54 of 4 0.68Down
Whole fly235 74 of 4

Looking for FBgn0035044. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime