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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035046 through 18771 annotations produced 1 hits



NADH ubiquinone oxidoreductase 19 kDa (CG3683):

Annotation Number : CG3683
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035046
Gbrowse : chr2R:20551947-20552963 (+) // 100.0 //
Probeset : 1634417_s_at
Accessions : protein= NP_001163296; /// NP_611954; /// NP_726470; /// NP_726471;, nucleotide= NM_001169825; /// NM_138110; /// NM_166680; /// NM_166681;
Pathway : NADH to ubiquinone // inferred from sequence or structural similarity"
Interpro : 0005747 // mitochondrial respiratory chain complex I // inferred from sequence or structural similarity
FlyMine data for FBgn0035046.
BDGP gene expression has embryonic in situ data for CG3683: 6 pix of staining in 10 body parts.
BioGrid reports that CG3683 interacts with CG7399 CG9911 .
VDRC has 3 RNAi stocks for FBgn0035046 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain743 224 of 4 1.10None
Head784 744 of 4 1.10None
Eye722 264 of 4 1.02None
Thoracicoabdominal ganglion907 294 of 4 1.30Up
Salivary gland747 264 of 4 1.06None
Crop616 194 of 4 0.90None
Midgut848 354 of 4 1.20Up
Tubule999 344 of 4 1.40Up
Hindgut1226 404 of 4 1.70Up
Heart896 254 of 4 1.27Up
Fat body1026 1294 of 4 1.45Up
Ovary425 64 of 4 0.60Down
Testis426 74 of 4 0.60Down
Male accessory glands413 54 of 4 0.60Down
Virgin spermatheca952 374 of 4 1.35Up
Mated spermatheca908 594 of 4 1.28Up
Adult carcass1739 464 of 4 2.50Up
Larval CNS388 564 of 4 0.55Down
Larval Salivary gland696 264 of 4 0.99None
Larval midgut579 84 of 4 0.82Down
Larval tubule420 454 of 4 0.60Down
Larval hindgut831 414 of 4 1.18None
Larval fat body329 94 of 4 0.50Down
Larval trachea453 374 of 4 0.64Down
Larval carcass876 834 of 4 1.24None
S2 cells (growing)421 84 of 4 0.60Down
Whole fly707 374 of 4

Looking for FBgn0035046. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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