FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0035049 through 18771 annotations produced 3 hits

Matrix metalloproteinase 1 (Mmp1):

Annotation Number : CG4859
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035049
Gbrowse : chr2R:20562188-20574897 (-) // 100.0 //
Probeset : 1632204_at
Accessions : protein= NP_523852; /// NP_726473;, nucleotide= NM_079128; /// NM_166683;
Pathway : open tracheal system // inferred from mutant phenotype /// 0035071 // salivary gland cell autophagic cell death // infe
Interpro : open tracheal system // inferred from mutant phenotype /// 0048102 // autophagic cell death // inferred from expression
FlyMine data for FBgn0035049.
BDGP gene expression has embryonic in situ data for Mmp1: 19 pix of staining in 4 body parts.
Homophila reports that CG4859 is a close match (2e-11) to human gene CACP;HAPO;MSF;PRG4;SZP (NP_005798), a gene associated with Camptodactyly-arthropathy-coxa vara-pericarditis syndrome, 208250 (3).
BioGrid reports that CG4859 interacts with CG6281 CG1794 .
TRiP has 1 RNAi stocks for FBgn0035049 available for purchase.
VDRC has 1 RNAi stocks for FBgn0035049 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	12 ± 1	4 of 4	0.70	None
Head	46 ± 3	4 of 4	2.80	Up
Eye	22 ± 1	4 of 4	1.33	None
Thoracicoabdominal ganglion	14 ± 2	4 of 4	0.90	None
Salivary gland	16 ± 2	2 of 4	0.97	None
Crop	14 ± 0	4 of 4	0.90	None
Midgut	31 ± 3	4 of 4	1.90	Up
Tubule	28 ± 3	4 of 4	1.70	Up
Hindgut	39 ± 4	4 of 4	2.40	Up
Heart	11 ± 0	4 of 4	0.71	None
Fat body	14 ± 0	4 of 4	0.87	None
Ovary	4 ± 0	2 of 4	0.20	Down
Testis	31 ± 3	4 of 4	1.90	Up
Male accessory glands	10 ± 4	2 of 4	0.60	None
Virgin spermatheca	12 ± 1	4 of 4	0.77	None
Mated spermatheca	22 ± 3	4 of 4	1.36	None
Adult carcass	65 ± 4	4 of 4	3.90	Up
Larval CNS	12 ± 1	4 of 4	0.72	None
Larval Salivary gland	15 ± 5	2 of 4	0.93	None
Larval midgut	28 ± 6	4 of 4	1.70	None
Larval tubule	60 ± 5	4 of 4	3.60	Up
Larval hindgut	27 ± 3	4 of 4	1.68	Up
Larval fat body	59 ± 6	4 of 4	3.60	Up
Larval trachea	60 ± 20	4 of 4	3.64	Up
Larval carcass	61 ± 17	4 of 4	3.70	None
S2 cells (growing)	94 ± 11	4 of 4	5.68	Up
Whole fly	16 ± 2	4 of 4

Matrix metalloproteinase 1 (Mmp1):

Annotation Number : CG4859
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035049
Gbrowse : chr2R:20558816-20574897 (-) // 100.0 //
Probeset : 1623160_at
Accessions : protein= NP_523852; /// NP_726473;, nucleotide= NM_079128; /// NM_166683;
Pathway : open tracheal system // inferred from mutant phenotype /// 0035071 // salivary gland cell autophagic cell death // infe
Interpro : open tracheal system // inferred from mutant phenotype /// 0048102 // autophagic cell death // inferred from expression
FlyMine data for FBgn0035049.
BDGP gene expression has embryonic in situ data for Mmp1: 19 pix of staining in 4 body parts.
Homophila reports that CG4859 is a close match (2e-11) to human gene CACP;HAPO;MSF;PRG4;SZP (NP_005798), a gene associated with Camptodactyly-arthropathy-coxa vara-pericarditis syndrome, 208250 (3).
BioGrid reports that CG4859 interacts with CG6281 CG1794 .
TRiP has 1 RNAi stocks for FBgn0035049 available for purchase.
VDRC has 1 RNAi stocks for FBgn0035049 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	46 ± 10	4 of 4	0.60	Down
Head	118 ± 11	4 of 4	1.50	Up
Eye	19 ± 0	4 of 4	0.25	Down
Thoracicoabdominal ganglion	84 ± 2	4 of 4	1.10	None
Salivary gland	38 ± 1	4 of 4	0.48	Down
Crop	79 ± 9	4 of 4	1.00	None
Midgut	400 ± 12	4 of 4	5.00	Up
Tubule	308 ± 17	4 of 4	3.80	Up
Hindgut	403 ± 43	4 of 4	5.00	Up
Heart	27 ± 5	4 of 4	0.34	Down
Fat body	49 ± 6	4 of 4	0.61	Down
Ovary	5 ± 1	3 of 4	0.10	Down
Testis	28 ± 2	4 of 4	0.30	Down
Male accessory glands	22 ± 10	3 of 4	0.30	Down
Virgin spermatheca	49 ± 9	4 of 4	0.61	Down
Mated spermatheca	62 ± 6	4 of 4	0.78	None
Adult carcass	99 ± 6	4 of 4	1.20	None
Larval CNS	57 ± 7	4 of 4	0.71	Down
Larval Salivary gland	47 ± 15	4 of 4	0.59	None
Larval midgut	578 ± 18	4 of 4	7.18	Up
Larval tubule	886 ± 65	4 of 4	11.00	Up
Larval hindgut	446 ± 15	4 of 4	5.55	Up
Larval fat body	166 ± 27	4 of 4	2.10	Up
Larval trachea	134 ± 30	4 of 4	1.67	Up
Larval carcass	331 ± 52	4 of 4	4.12	Up
S2 cells (growing)	787 ± 83	4 of 4	9.78	Up
Whole fly	80 ± 7	4 of 4

Matrix metalloproteinase 1 (Mmp1):

Annotation Number : CG4859
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035049
Gbrowse : chr2R:20562188-20574897 (-) // 100.0 //
Probeset : 1625761_a_at
Accessions : protein= NP_523852; /// NP_726473;, nucleotide= NM_079128; /// NM_166683;
Pathway : open tracheal system // inferred from mutant phenotype /// 0035071 // salivary gland cell autophagic cell death // infe
Interpro : open tracheal system // inferred from mutant phenotype /// 0048102 // autophagic cell death // inferred from expression
FlyMine data for FBgn0035049.
BDGP gene expression has embryonic in situ data for Mmp1: 19 pix of staining in 4 body parts.
Homophila reports that CG4859 is a close match (2e-11) to human gene CACP;HAPO;MSF;PRG4;SZP (NP_005798), a gene associated with Camptodactyly-arthropathy-coxa vara-pericarditis syndrome, 208250 (3).
BioGrid reports that CG4859 interacts with CG6281 CG1794 .
TRiP has 1 RNAi stocks for FBgn0035049 available for purchase.
VDRC has 1 RNAi stocks for FBgn0035049 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	19 ± 1	0 of 4	0.70	Down
Head	52 ± 3	4 of 4	1.80	Up
Eye	17 ± 1	3 of 4	0.60	Down
Thoracicoabdominal ganglion	28 ± 1	2 of 4	1.00	None
Salivary gland	34 ± 2	0 of 4	1.18	None
Crop	21 ± 2	1 of 4	0.70	None
Midgut	107 ± 7	4 of 4	3.70	Up
Tubule	58 ± 3	4 of 4	2.00	Up
Hindgut	100 ± 5	4 of 4	3.40	Up
Heart	15 ± 1	4 of 4	0.52	Down
Fat body	15 ± 3	0 of 4	0.53	Down
Ovary	3 ± 1	0 of 4	0.10	Down
Testis	18 ± 1	0 of 4	0.60	Down
Male accessory glands	16 ± 5	0 of 4	0.60	None
Virgin spermatheca	9 ± 2	0 of 4	0.34	Down
Mated spermatheca	12 ± 2	0 of 4	0.44	Down
Adult carcass	58 ± 8	4 of 4	2.00	Up
Larval CNS	13 ± 2	0 of 4	0.45	Down
Larval Salivary gland	19 ± 4	0 of 4	0.67	None
Larval midgut	101 ± 2	4 of 4	3.50	Up
Larval tubule	229 ± 5	4 of 4	7.90	Up
Larval hindgut	81 ± 3	4 of 4	2.80	Up
Larval fat body	47 ± 6	1 of 4	1.60	None
Larval trachea	81 ± 29	4 of 4	2.82	Up
Larval carcass	72 ± 26	2 of 4	2.50	None
S2 cells (growing)	473 ± 29	4 of 4	16.29	Up
Whole fly	29 ± 1	0 of 4

Looking for FBgn0035049. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720