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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035050 through 18771 annotations produced 1 hits



chr2R:20578937-20581071 (-) // 100.0 // (sialyltransferase-like):

Annotation Number : CG4871
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1630522_a_at
Accessions : protein= , nucleotide= NP_523853; /// NP_726474;
Pathway : 0006486 // protein glycosylation // inferred from electronic annotation /// 0009311 // oligosaccharide metabolic process
Interpro : 0005576 // extracellular region // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from direct ass
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain289 ± 84 of 443.70Up
Head52 ± 24 of 4 7.80Up
Eye23 ± 24 of 4 3.55Up
Thoracicoabdominal ganglion82 ± 34 of 412.40Up
Salivary gland5 ± 31 of 4 0.77None
Crop3 ± 10 of 4 0.50None
Midgut3 ± 10 of 4 0.50None
Tubule4 ± 00 of 4 0.70Down
Hindgut0 ± 00 of 4 0.10None
Heart4 ± 20 of 4 0.68None
Fat body4 ± 10 of 4 0.72None
Ovary1 ± 00 of 4 0.30None
Testis7 ± 02 of 4 1.10None
Male accessory glands3 ± 10 of 4 0.60None
Virgin spermatheca5 ± 20 of 4 0.85None
Mated spermatheca2 ± 00 of 4 0.33None
Adult carcass17 ± 10 of 4 2.60Up
Larval CNS64 ± 94 of 4 9.74Up
Larval Salivary gland3 ± 10 of 4 0.54None
Larval midgut2 ± 00 of 4 0.32None
Larval tubule3 ± 10 of 4 0.50None
Larval hindgut0 ± 00 of 4 0.09None
Larval fat body3 ± 20 of 4 0.50None
Larval trachea2 ± 10 of 4 0.39None
Larval carcass7 ± 10 of 4 1.17None
S2 cells (growing)3 ± 00 of 4 0.53None
Whole fly6 ± 21 of 4

Looking for FBgn0035050. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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