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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035056 through 18771 annotations produced 1 hits

CG9196 (spz6):

Annotation Number : CG9196
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035056
Gbrowse : chr2R:20644902-20647989 (+) // 100.0 //
Probeset : 1635245_at
Accessions : protein= NP_611961;, nucleotide= NM_138117;
FlyMine data for FBgn0035056.
BioGrid reports that CG9196 interacts with CG9465 .
VDRC has 2 RNAi stocks for FBgn0035056 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 20 of 4 0.30None
Head4 10 of 4 0.30None
Eye7 10 of 4 0.55None
Thoracicoabdominal ganglion5 00 of 4 0.40None
Salivary gland22 30 of 4 1.72None
Crop6 10 of 4 0.50None
Midgut5 20 of 4 0.40None
Tubule5 00 of 4 0.40Down
Hindgut60 34 of 4 4.50Up
Heart3 10 of 4 0.24None
Fat body6 10 of 4 0.47None
Ovary5 00 of 4 0.40None
Testis2 10 of 4 0.20None
Male accessory glands4 10 of 4 0.30None
Virgin spermatheca2 00 of 4 0.18None
Mated spermatheca2 00 of 4 0.16None
Adult carcass4 10 of 4 0.40None
Larval CNS5 10 of 4 0.43None
Larval Salivary gland4 10 of 4 0.37None
Larval midgut8 20 of 4 0.66None
Larval tubule2 10 of 4 0.20None
Larval hindgut202 204 of 415.23Up
Larval fat body5 10 of 4 0.40None
Larval trachea13 31 of 4 1.03None
Larval carcass40 34 of 4 3.04Up
S2 cells (growing)3 00 of 4 0.24None
Whole fly13 50 of 4

Looking for FBgn0035056. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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