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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035057 through 18771 annotations produced 2 hits



/// GA17747 (CG3880 /// DpseGA17747):

Annotation Number : CG3880
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035057
Gbrowse : chr2R:20648285-20650069 (+) // 100.0 //
Probeset : 1640800_at
Accessions : protein= NP_611962;, nucleotide= NM_138118;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035057.
BioGrid reports that CG3880 interacts with CG3997 CG4307 CG4818 CG4832 CG5133 CG5338 CG6372 CG6425 CG6724 CG7067 CG7329 CG7449 .
VDRC has 2 RNAi stocks for FBgn0035057 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 00 of 4 1.20None
Head4 20 of 4 1.00None
Eye1 10 of 4 0.44None
Thoracicoabdominal ganglion6 00 of 4 1.50None
Salivary gland10 30 of 4 2.50None
Crop9 11 of 4 2.30None
Midgut3 00 of 4 0.90None
Tubule4 00 of 4 0.90None
Hindgut5 10 of 4 1.30None
Heart0 00 of 4 0.17None
Fat body6 20 of 4 1.55None
Ovary2 00 of 4 0.60None
Testis7 14 of 4 1.80None
Male accessory glands4 20 of 4 1.00None
Virgin spermatheca6 10 of 4 1.60None
Mated spermatheca5 10 of 4 1.24None
Adult carcass8 20 of 4 1.90None
Larval CNS5 10 of 4 1.28None
Larval Salivary gland5 20 of 4 1.28None
Larval midgut6 10 of 4 1.55None
Larval tubule4 00 of 4 1.00None
Larval hindgut8 01 of 4 2.03None
Larval fat body5 21 of 4 1.20None
Larval trachea41 94 of 4 9.76Up
Larval carcass34 24 of 4 8.03Up
S2 cells (growing)4 01 of 4 1.01None
Whole fly4 10 of 4



(CG3880):

Annotation Number : CR_tc_LD28571
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr2R:20646125-20649411 (-) // 100.0 //
Probeset : 1635557_at
Accessions : protein= , nucleotide=


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.70None
Head4 01 of 4 1.20None
Eye2 10 of 4 0.71None
Thoracicoabdominal ganglion4 12 of 4 1.50None
Salivary gland7 20 of 4 2.13None
Crop4 10 of 4 1.30None
Midgut4 10 of 4 1.30None
Tubule3 00 of 4 1.00None
Hindgut4 10 of 4 1.20None
Heart1 00 of 4 0.47None
Fat body2 20 of 4 0.79None
Ovary1 00 of 4 0.50None
Testis1 00 of 4 0.40None
Male accessory glands11 10 of 4 3.30Up
Virgin spermatheca4 10 of 4 1.17None
Mated spermatheca4 00 of 4 1.30None
Adult carcass7 20 of 4 2.20None
Larval CNS3 01 of 4 0.95None
Larval Salivary gland4 10 of 4 1.43None
Larval midgut8 10 of 4 2.44None
Larval tubule4 00 of 4 1.30None
Larval hindgut2 00 of 4 0.81None
Larval fat body4 00 of 4 1.40None
Larval trachea1 00 of 4 0.49None
Larval carcass1 00 of 4 0.40None
S2 cells (growing)3 00 of 4 0.97None
Whole fly3 10 of 4

Looking for FBgn0035057. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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