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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035064 through 18771 annotations produced 1 hits



anon-fast-evolving-1E12 (CG16912):

Annotation Number : CG16912
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035064
Gbrowse : chr2R:20669243-20671018 (-) // 100.0 //
Probeset : 1636157_at
Accessions : protein= NP_611967;, nucleotide= NM_138123;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from sequence or st
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // in
FlyMine data for FBgn0035064.
BDGP gene expression has embryonic in situ data for CG16912: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0035064 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain52 ± 14 of 4 0.80None
Head58 ± 74 of 4 0.90None
Eye82 ± 64 of 4 1.28None
Thoracicoabdominal ganglion73 ± 44 of 4 1.10None
Salivary gland35 ± 23 of 4 0.54Down
Crop69 ± 24 of 4 1.10None
Midgut62 ± 24 of 4 1.00None
Tubule64 ± 34 of 4 1.00None
Hindgut48 ± 14 of 4 0.80Down
Heart75 ± 24 of 4 1.17Up
Fat body69 ± 44 of 4 1.08None
Ovary121 ± 44 of 4 1.90Up
Testis19 ± 04 of 4 0.30Down
Male accessory glands29 ± 04 of 4 0.50Down
Virgin spermatheca116 ± 44 of 4 1.81Up
Mated spermatheca98 ± 24 of 4 1.53Up
Adult carcass65 ± 54 of 4 1.00None
Larval CNS68 ± 64 of 4 1.06None
Larval Salivary gland60 ± 24 of 4 0.94None
Larval midgut65 ± 14 of 4 1.02None
Larval tubule96 ± 24 of 4 1.50Up
Larval hindgut78 ± 64 of 4 1.22None
Larval fat body46 ± 44 of 4 0.70Down
Larval trachea71 ± 64 of 4 1.11None
Larval carcass72 ± 64 of 4 1.13None
S2 cells (growing)79 ± 24 of 4 1.23Up
Whole fly64 ± 24 of 4

Looking for FBgn0035064. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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