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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035065 through 18771 annotations produced 1 hits



(CG3589):

Annotation Number : CG3589
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035065
Gbrowse : chr2R:20671094-20673073 (+) // 100.0 //
Probeset : 1634746_at
Accessions : protein= NP_611968;, nucleotide= NM_138124;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0035065.
BDGP gene expression has embryonic in situ data for CG3589: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0035065 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain67 34 of 4 0.90None
Head69 34 of 4 1.00None
Eye64 24 of 4 0.89None
Thoracicoabdominal ganglion78 24 of 4 1.10None
Salivary gland101 14 of 4 1.41Up
Crop150 44 of 4 2.10Up
Midgut120 64 of 4 1.70Up
Tubule121 24 of 4 1.70Up
Hindgut79 44 of 4 1.10None
Heart106 44 of 4 1.48Up
Fat body140 114 of 4 1.95Up
Ovary130 34 of 4 1.80Up
Testis28 04 of 4 0.40Down
Male accessory glands92 44 of 4 1.30Up
Virgin spermatheca95 64 of 4 1.33Up
Mated spermatheca87 54 of 4 1.22None
Adult carcass97 64 of 4 1.40Up
Larval CNS67 14 of 4 0.94None
Larval Salivary gland67 24 of 4 0.93None
Larval midgut303 424 of 4 4.21Up
Larval tubule407 104 of 4 5.70Up
Larval hindgut96 94 of 4 1.34None
Larval fat body396 394 of 4 5.50Up
Larval trachea70 44 of 4 0.97None
Larval carcass64 64 of 4 0.90None
S2 cells (growing)84 34 of 4 1.17None
Whole fly72 44 of 4

Looking for FBgn0035065. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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