FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0035065 through 18771 annotations produced 1 hits

(CG3589):

Annotation Number : CG3589
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035065
Gbrowse : chr2R:20671094-20673073 (+) // 100.0 //
Probeset : 1634746_at
Accessions : protein= NP_611968;, nucleotide= NM_138124;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0035065.
BDGP gene expression has embryonic in situ data for CG3589: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0035065 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	67 ± 3	4 of 4	0.90	None
Head	69 ± 3	4 of 4	1.00	None
Eye	64 ± 2	4 of 4	0.89	None
Thoracicoabdominal ganglion	78 ± 2	4 of 4	1.10	None
Salivary gland	101 ± 1	4 of 4	1.41	Up
Crop	150 ± 4	4 of 4	2.10	Up
Midgut	120 ± 6	4 of 4	1.70	Up
Tubule	121 ± 2	4 of 4	1.70	Up
Hindgut	79 ± 4	4 of 4	1.10	None
Heart	106 ± 4	4 of 4	1.48	Up
Fat body	140 ± 11	4 of 4	1.95	Up
Ovary	130 ± 3	4 of 4	1.80	Up
Testis	28 ± 0	4 of 4	0.40	Down
Male accessory glands	92 ± 4	4 of 4	1.30	Up
Virgin spermatheca	95 ± 6	4 of 4	1.33	Up
Mated spermatheca	87 ± 5	4 of 4	1.22	None
Adult carcass	97 ± 6	4 of 4	1.40	Up
Larval CNS	67 ± 1	4 of 4	0.94	None
Larval Salivary gland	67 ± 2	4 of 4	0.93	None
Larval midgut	303 ± 42	4 of 4	4.21	Up
Larval tubule	407 ± 10	4 of 4	5.70	Up
Larval hindgut	96 ± 9	4 of 4	1.34	None
Larval fat body	396 ± 39	4 of 4	5.50	Up
Larval trachea	70 ± 4	4 of 4	0.97	None
Larval carcass	64 ± 6	4 of 4	0.90	None
S2 cells (growing)	84 ± 3	4 of 4	1.17	None
Whole fly	72 ± 4	4 of 4

Looking for FBgn0035065. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720