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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035068 through 18771 annotations produced 1 hits



(CG12849):

Annotation Number : CG12849
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035068
Gbrowse : chr2R:20685610-20686136 (+) // 100.0 //
Probeset : 1633702_at
Accessions : protein= NP_611969;, nucleotide= NM_138125;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035068.
BioGrid reports that CG12849 interacts with CG14207 CG18271 CG6506 .
VDRC has 3 RNAi stocks for FBgn0035068 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.90None
Head2 10 of 4 0.90None
Eye1 00 of 4 0.44None
Thoracicoabdominal ganglion1 00 of 4 0.50None
Salivary gland5 20 of 4 1.85None
Crop3 10 of 4 1.00None
Midgut7 20 of 4 2.30None
Tubule4 10 of 4 1.50None
Hindgut3 10 of 4 1.00None
Heart1 00 of 4 0.53None
Fat body2 00 of 4 0.61None
Ovary1 00 of 4 0.50None
Testis5 10 of 4 1.60None
Male accessory glands4 10 of 4 1.30None
Virgin spermatheca2 10 of 4 0.83None
Mated spermatheca3 10 of 4 1.07None
Adult carcass4 00 of 4 1.30None
Larval CNS2 10 of 4 0.80None
Larval Salivary gland3 10 of 4 1.10None
Larval midgut6 10 of 4 2.14None
Larval tubule2 10 of 4 0.90None
Larval hindgut2 10 of 4 0.68None
Larval fat body7 30 of 4 2.50None
Larval trachea4 30 of 4 1.37None
Larval carcass4 00 of 4 1.30None
S2 cells (growing)2 10 of 4 0.81None
Whole fly3 10 of 4

Looking for FBgn0035068. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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