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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035070 through 18771 annotations produced 1 hits



(CG3650):

Annotation Number : CG3650
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035070
Gbrowse : chr2R:20736498-20737284 (+) // 100.0 //
Probeset : 1624875_at
Accessions : protein= NP_611971;, nucleotide= NM_138127;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0035070.
Homophila reports that CG3650 is a close match (1e-11) to human gene KLK1;KLKR (NP_002248), a gene associated with [Kallikrein, decreased urinary activity of] (3).
VDRC has 2 RNAi stocks for FBgn0035070 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.80None
Head3 ± 10 of 4 2.00None
Eye8 ± 20 of 4 4.80None
Thoracicoabdominal ganglion2 ± 10 of 4 1.40None
Salivary gland5 ± 20 of 4 3.16None
Crop2 ± 10 of 4 1.50None
Midgut1 ± 00 of 4 1.00None
Tubule1 ± 00 of 4 0.90Down
Hindgut1 ± 00 of 4 0.90None
Heart8 ± 10 of 4 4.70Up
Fat body5 ± 20 of 4 3.06None
Ovary0 ± 00 of 4 0.50None
Testis2 ± 00 of 4 1.10None
Male accessory glands11 ± 50 of 4 6.60None
Virgin spermatheca2 ± 00 of 4 1.43None
Mated spermatheca3 ± 10 of 4 2.26None
Adult carcass6 ± 20 of 4 3.50None
Larval CNS2 ± 10 of 4 1.39None
Larval Salivary gland8 ± 20 of 4 4.88None
Larval midgut1 ± 00 of 4 1.03None
Larval tubule2 ± 10 of 4 1.20None
Larval hindgut2 ± 00 of 4 1.17None
Larval fat body10 ± 40 of 4 5.80None
Larval trachea10 ± 20 of 4 6.30Up
Larval carcass2 ± 00 of 4 1.61None
S2 cells (growing)3 ± 10 of 4 2.01None
Whole fly1 ± 00 of 4

Looking for FBgn0035070. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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