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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035073 through 18771 annotations produced 1 hits



(CG16896):

Annotation Number : CG16896
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035073
Gbrowse : chr2R:20758928-20762420 (-) // 100.0 //
Probeset : 1638352_at
Accessions : protein= NP_611973;, nucleotide= NM_138129;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005097 // Rab GTPase activator activity // inferred from electronic annotation /// 0005515 // protein binding // inferr
FlyMine data for FBgn0035073.
BDGP gene expression has embryonic in situ data for CG16896: 4 pix of staining in 1 body parts.
BioGrid reports that CG16896 interacts with CG2678 .
VDRC has 3 RNAi stocks for FBgn0035073 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain61 24 of 4 1.30Up
Head19 32 of 4 0.40Down
Eye14 31 of 4 0.31Down
Thoracicoabdominal ganglion45 24 of 4 0.90None
Salivary gland20 60 of 4 0.43Down
Crop37 14 of 4 0.80Down
Midgut16 00 of 4 0.40Down
Tubule40 24 of 4 0.90Down
Hindgut32 43 of 4 0.70Down
Heart15 10 of 4 0.33Down
Fat body10 40 of 4 0.22Down
Ovary94 44 of 4 2.00Up
Testis58 54 of 4 1.20None
Male accessory glands24 50 of 4 0.50Down
Virgin spermatheca13 10 of 4 0.27Down
Mated spermatheca22 10 of 4 0.46Down
Adult carcass17 20 of 4 0.40Down
Larval CNS85 34 of 4 1.80Up
Larval Salivary gland24 21 of 4 0.52Down
Larval midgut4 20 of 4 0.10Down
Larval tubule9 10 of 4 0.20Down
Larval hindgut16 14 of 4 0.35Down
Larval fat body21 30 of 4 0.50Down
Larval trachea32 44 of 4 0.68Down
Larval carcass27 24 of 4 0.58Down
S2 cells (growing)43 04 of 4 0.92None
Whole fly47 14 of 4

Looking for FBgn0035073. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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