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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035078 through 18771 annotations produced 1 hits



(CG2857):

Annotation Number : CG2857
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035078
Gbrowse : chr2R:20786907-20788191 (-) // 100.0 //
Probeset : 1636951_at
Accessions : protein= NP_611977;, nucleotide= NM_138133;
Pathway : 0005740 // mitochondrial envelope // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electroni
FlyMine data for FBgn0035078.
Homophila reports that CG2857 is a close match (1e-11) to human gene UCP1 (NP_068605), a gene associated with {Obesity, susceptibility to}, 601665 (3).
VDRC has 2 RNAi stocks for FBgn0035078 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.20Down
Head3 00 of 4 0.20Down
Eye5 11 of 4 0.40Down
Thoracicoabdominal ganglion4 11 of 4 0.40Down
Salivary gland8 31 of 4 0.69None
Crop3 10 of 4 0.30Down
Midgut6 11 of 4 0.50Down
Tubule5 00 of 4 0.50Down
Hindgut6 10 of 4 0.50Down
Heart2 10 of 4 0.20Down
Fat body3 10 of 4 0.30Down
Ovary2 00 of 4 0.20Down
Testis116 74 of 4 9.00Up
Male accessory glands8 20 of 4 0.60None
Virgin spermatheca4 10 of 4 0.36Down
Mated spermatheca4 10 of 4 0.32Down
Adult carcass7 21 of 4 0.60None
Larval CNS2 01 of 4 0.22Down
Larval Salivary gland5 10 of 4 0.44Down
Larval midgut2 00 of 4 0.18Down
Larval tubule5 10 of 4 0.40Down
Larval hindgut2 00 of 4 0.18Down
Larval fat body21 82 of 4 1.60None
Larval trachea1 00 of 4 0.11Down
Larval carcass1 00 of 4 0.15Down
S2 cells (growing)8 04 of 4 0.63Down
Whole fly13 14 of 4

Looking for FBgn0035078. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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