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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035083 through 18771 annotations produced 1 hits



Troponin C-akin-1 (Tina-1):

Annotation Number : CG2803
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035083
Gbrowse : chr2R:20828144-20829932 (-) // 100.0 //
Probeset : 1624153_at
Accessions : protein= NP_001033974; /// NP_611983;, nucleotide= NM_001038885; /// NM_138139;
Interpro : 0008307 // structural constituent of muscle // non-traceable author statement /// 0008415 // acyltransferase activity //
FlyMine data for FBgn0035083.
BioGrid reports that CG2803 interacts with CG32096 .
VDRC has 1 RNAi stocks for FBgn0035083 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain418 ± 114 of 4 0.90None
Head367 ± 304 of 4 0.80Down
Eye398 ± 364 of 4 0.82None
Thoracicoabdominal ganglion388 ± 34 of 4 0.80None
Salivary gland261 ± 134 of 4 0.54Down
Crop708 ± 234 of 4 1.50Up
Midgut1112 ± 474 of 4 2.30Up
Tubule1046 ± 974 of 4 2.20Up
Hindgut1123 ± 194 of 4 2.30Up
Heart871 ± 284 of 4 1.80Up
Fat body422 ± 494 of 4 0.87None
Ovary630 ± 174 of 4 1.30Up
Testis79 ± 34 of 4 0.20Down
Male accessory glands768 ± 394 of 4 1.60Up
Virgin spermatheca291 ± 104 of 4 0.60Down
Mated spermatheca279 ± 264 of 4 0.58Down
Adult carcass478 ± 234 of 4 1.00None
Larval CNS657 ± 514 of 4 1.36Up
Larval Salivary gland2203 ± 574 of 4 4.54Up
Larval midgut1619 ± 2244 of 4 3.34Up
Larval tubule624 ± 54 of 4 1.30Up
Larval hindgut1891 ± 1184 of 4 3.90Up
Larval fat body44 ± 34 of 4 0.10Down
Larval trachea2056 ± 1514 of 4 4.24Up
Larval carcass783 ± 724 of 4 1.61Up
S2 cells (growing)917 ± 384 of 4 1.89Up
Whole fly484 ± 324 of 4

Looking for FBgn0035083. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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