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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035086 through 18771 annotations produced 1 hits



(CG12851):

Annotation Number : CG12851
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035086
Gbrowse : chr2R:20837155-20840796 (+) // 100.0 //
Probeset : 1637071_at
Accessions : protein= NP_611987;, nucleotide= NM_138143;
FlyMine data for FBgn0035086.
VDRC has 2 RNAi stocks for FBgn0035086 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain85 ± 14 of 416.70Up
Head14 ± 12 of 4 2.90Up
Eye3 ± 11 of 4 0.72None
Thoracicoabdominal ganglion79 ± 114 of 415.50Up
Salivary gland3 ± 10 of 4 0.63None
Crop2 ± 10 of 4 0.60None
Midgut1 ± 00 of 4 0.20Down
Tubule0 ± 00 of 4 0.10Down
Hindgut0 ± 00 of 4 0.10Down
Heart0 ± 00 of 4 0.18Down
Fat body2 ± 10 of 4 0.45Down
Ovary0 ± 00 of 4 0.10Down
Testis32 ± 14 of 4 6.30Up
Male accessory glands3 ± 20 of 4 0.70None
Virgin spermatheca3 ± 10 of 4 0.68None
Mated spermatheca2 ± 00 of 4 0.42Down
Adult carcass2 ± 10 of 4 0.40Down
Larval CNS30 ± 34 of 4 5.98Up
Larval Salivary gland2 ± 10 of 4 0.49None
Larval midgut0 ± 00 of 4 0.15Down
Larval tubule1 ± 10 of 4 0.30Down
Larval hindgut1 ± 00 of 4 0.20Down
Larval fat body6 ± 40 of 4 1.30None
Larval trachea0 ± 00 of 4 0.17Down
Larval carcass1 ± 00 of 4 0.25Down
S2 cells (growing)0 ± 00 of 4 0.12Down
Whole fly5 ± 00 of 4

Looking for FBgn0035086. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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