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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035088 through 18771 annotations produced 1 hits



Drosophila P29 (CG3776):

Annotation Number : CG3776
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035088
Gbrowse : chr2R:20857295-20858378 (+) // 99.49 //
Probeset : 1623081_at
Accessions : protein= NP_611989;, nucleotide= NM_138145;
Pathway : 0005739 // mitochondrion // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from direct
FlyMine data for FBgn0035088.
BDGP gene expression has embryonic in situ data for CG3776: 17 pix of staining in 3 body parts.
BioGrid reports that CG3776 interacts with CG3978 .
VDRC has 3 RNAi stocks for FBgn0035088 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain308 34 of 4 0.90None
Head387 194 of 4 1.20None
Eye592 114 of 4 1.77Up
Thoracicoabdominal ganglion273 154 of 4 0.80None
Salivary gland582 194 of 4 1.74Up
Crop397 164 of 4 1.20None
Midgut336 74 of 4 1.00None
Tubule204 34 of 4 0.60Down
Hindgut342 184 of 4 1.00None
Heart576 144 of 4 1.72Up
Fat body501 384 of 4 1.50Up
Ovary419 14 of 4 1.30Up
Testis277 104 of 4 0.80None
Male accessory glands280 64 of 4 0.80None
Virgin spermatheca284 144 of 4 0.85None
Mated spermatheca297 84 of 4 0.89None
Adult carcass357 264 of 4 1.10None
Larval CNS461 134 of 4 1.38Up
Larval Salivary gland592 94 of 4 1.77Up
Larval midgut255 64 of 4 0.76Down
Larval tubule391 184 of 4 1.20None
Larval hindgut354 64 of 4 1.06None
Larval fat body353 324 of 4 1.10None
Larval trachea378 164 of 4 1.13None
Larval carcass405 84 of 4 1.21Up
S2 cells (growing)328 64 of 4 0.98None
Whole fly334 194 of 4

Looking for FBgn0035088. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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