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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035092 through 18771 annotations produced 1 hits



Neuropeptide like precursor protein 1 (Nplp1):

Annotation Number : CG3441
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035092
Gbrowse : chr2R:20919902-20927520 (+) // 100.0 //
Probeset : 1628450_at
Accessions : protein= NP_001036570; /// NP_001137760; /// NP_611993;, nucleotide= NM_001043105; /// NM_001144288; /// NM_138149;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
Interpro : 0005184 // neuropeptide hormone activity // non-traceable author statement
FlyMine data for FBgn0035092.
BDGP gene expression has embryonic in situ data for CG3441: 26 pix of staining in 3 body parts.
BioGrid reports that CG3441 interacts with CG4832 CG5939 CG7238 .
TRiP has 1 RNAi stocks for FBgn0035092 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035092 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1019 284 of 4 9.60Up
Head289 194 of 4 2.70Up
Eye19 14 of 4 0.18Down
Thoracicoabdominal ganglion3692 1344 of 434.80Up
Salivary gland13 10 of 4 0.12Down
Crop5 10 of 4 0.10Down
Midgut3 10 of 4 0.00Down
Tubule3 00 of 4 0.00Down
Hindgut3 10 of 4 0.00Down
Heart6 12 of 4 0.06Down
Fat body17 64 of 4 0.16Down
Ovary1 00 of 4 0.00Down
Testis2 11 of 4 0.00Down
Male accessory glands3 10 of 4 0.00Down
Virgin spermatheca17 24 of 4 0.17Down
Mated spermatheca17 34 of 4 0.16Down
Adult carcass47 124 of 4 0.40Down
Larval CNS1043 1054 of 4 9.82Up
Larval Salivary gland3 10 of 4 0.03Down
Larval midgut3 00 of 4 0.04Down
Larval tubule3 11 of 4 0.00Down
Larval hindgut5 01 of 4 0.05Down
Larval fat body8 12 of 4 0.10Down
Larval trachea6 52 of 4 0.06Down
Larval carcass9 10 of 4 0.09Down
S2 cells (growing)2 02 of 4 0.03Down
Whole fly106 64 of 4

Looking for FBgn0035092. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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