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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035094 through 18771 annotations produced 2 hits



(CG9380):

Annotation Number : CG9380
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035094
Gbrowse : chr2R:21072648-21076360 (-) // 100.0 //
Probeset : 1629434_at
Accessions : protein= NP_001036571; /// NP_726511;, nucleotide= NM_001043106; /// NM_166707;
FlyMine data for FBgn0035094.
VDRC has 1 RNAi stocks for FBgn0035094 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head5 12 of 4 0.00Down
Eye2 10 of 4 0.01Down
Thoracicoabdominal ganglion5 10 of 4 0.00Down
Salivary gland9 31 of 4 0.04Down
Crop12 14 of 4 0.00Down
Midgut2456 244 of 4 9.40Up
Tubule1833 694 of 4 7.00Up
Hindgut676 74 of 4 2.60Up
Heart4 00 of 4 0.02Down
Fat body6 51 of 4 0.02Down
Ovary6 12 of 4 0.00Down
Testis17 04 of 4 0.10Down
Male accessory glands20 34 of 4 0.10Down
Virgin spermatheca5 21 of 4 0.02Down
Mated spermatheca5 10 of 4 0.02Down
Adult carcass7 20 of 4 0.00Down
Larval CNS5 13 of 4 0.02Down
Larval Salivary gland1 00 of 4 0.01Down
Larval midgut1653 1444 of 4 6.34Up
Larval tubule1775 394 of 4 6.80Up
Larval hindgut608 384 of 4 2.33Up
Larval fat body19 24 of 4 0.10Down
Larval trachea2 20 of 4 0.01Down
Larval carcass2 00 of 4 0.01Down
S2 cells (growing)9 04 of 4 0.04Down
Whole fly260 294 of 4



(CG9380):

Annotation Number : CG9380
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035094
Gbrowse : chr2R:21071151-21076360 (-) // 100.0 //
Probeset : 1639529_at
Accessions : protein= NP_001036571; /// NP_726511;, nucleotide= NM_001043106; /// NM_166707;
FlyMine data for FBgn0035094.
VDRC has 1 RNAi stocks for FBgn0035094 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.20Down
Head4 10 of 4 0.20Down
Eye5 00 of 4 0.32Down
Thoracicoabdominal ganglion7 13 of 4 0.40Down
Salivary gland12 32 of 4 0.69None
Crop9 03 of 4 0.50None
Midgut180 44 of 4 9.70Up
Tubule100 24 of 4 5.40Up
Hindgut34 24 of 4 1.80Up
Heart3 10 of 4 0.16Down
Fat body6 42 of 4 0.36Down
Ovary3 00 of 4 0.20Down
Testis5 02 of 4 0.30Down
Male accessory glands11 22 of 4 0.60None
Virgin spermatheca6 11 of 4 0.33Down
Mated spermatheca4 10 of 4 0.24Down
Adult carcass6 30 of 4 0.40None
Larval CNS2 00 of 4 0.15Down
Larval Salivary gland6 10 of 4 0.33Down
Larval midgut126 84 of 4 6.79Up
Larval tubule122 14 of 4 6.60Up
Larval hindgut34 14 of 4 1.86Up
Larval fat body6 10 of 4 0.40Down
Larval trachea3 20 of 4 0.21Down
Larval carcass3 00 of 4 0.16Down
S2 cells (growing)3 00 of 4 0.17Down
Whole fly18 34 of 4

Looking for FBgn0035094. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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