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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035099 through 18771 annotations produced 1 hits



(CG6845):

Annotation Number : CG6845
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035099
Gbrowse : chr3L:146452-149059 (+) // 100.0 //
Probeset : 1630763_at
Accessions : protein= NP_001137858; /// NP_001137859; /// NP_612000;, nucleotide= NM_001144386; /// NM_001144387; /// NM_138156;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0035099.
BioGrid reports that CG6845 interacts with CG8786 .
VDRC has 1 RNAi stocks for FBgn0035099 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 ± 14 of 4 0.70Down
Head11 ± 23 of 4 0.40Down
Eye23 ± 34 of 4 0.85None
Thoracicoabdominal ganglion60 ± 24 of 4 2.20Up
Salivary gland82 ± 04 of 4 2.99Up
Crop36 ± 14 of 4 1.30Up
Midgut77 ± 64 of 4 2.80Up
Tubule84 ± 54 of 4 3.10Up
Hindgut56 ± 34 of 4 2.10Up
Heart27 ± 14 of 4 0.99None
Fat body30 ± 64 of 4 1.13None
Ovary30 ± 24 of 4 1.10None
Testis53 ± 24 of 4 2.00Up
Male accessory glands38 ± 24 of 4 1.40Up
Virgin spermatheca45 ± 14 of 4 1.66Up
Mated spermatheca53 ± 34 of 4 1.96Up
Adult carcass28 ± 24 of 4 1.00None
Larval CNS104 ± 94 of 4 3.80Up
Larval Salivary gland133 ± 34 of 4 4.86Up
Larval midgut35 ± 44 of 4 1.30None
Larval tubule85 ± 64 of 4 3.10Up
Larval hindgut41 ± 14 of 4 1.52Up
Larval fat body79 ± 104 of 4 2.90Up
Larval trachea146 ± 144 of 4 5.36Up
Larval carcass37 ± 44 of 4 1.36None
S2 cells (growing)114 ± 24 of 4 4.17Up
Whole fly27 ± 24 of 4

Looking for FBgn0035099. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime