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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035103 through 18771 annotations produced 1 hits



vitamin D[[3]] up-regulated protein 1 (Vdup1):

Annotation Number : CG7047
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035103
Gbrowse : chr3L:176307-178629 (-) // 100.0 //
Probeset : 1641167_s_at
Accessions : protein= NP_001163303; /// NP_612004; /// NP_728479; /// NP_995943;, nucleotide= NM_001169832; /// NM_138160; /// NM_167798; /// NM_206221;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay
Interpro : 0016564 // transcription repressor activity // inferred from direct assay
FlyMine data for FBgn0035103.
BDGP gene expression has embryonic in situ data for CG7047: 16 pix of staining in 20 body parts.
BioGrid reports that CG7047 interacts with CG7399 .
VDRC has 2 RNAi stocks for FBgn0035103 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 11 of 4 0.10Down
Head190 ± 34 of 4 3.20Up
Eye319 ± 244 of 4 5.44Up
Thoracicoabdominal ganglion17 ± 11 of 4 0.30Down
Salivary gland599 ± 264 of 410.21Up
Crop814 ± 364 of 413.90Up
Midgut28 ± 14 of 4 0.50Down
Tubule11 ± 02 of 4 0.20Down
Hindgut427 ± 104 of 4 7.30Up
Heart18 ± 14 of 4 0.32Down
Fat body18 ± 43 of 4 0.32Down
Ovary6 ± 00 of 4 0.10Down
Testis9 ± 11 of 4 0.20Down
Male accessory glands22 ± 12 of 4 0.40Down
Virgin spermatheca49 ± 34 of 4 0.84None
Mated spermatheca62 ± 34 of 4 1.06None
Adult carcass227 ± 114 of 4 3.90Up
Larval CNS132 ± 194 of 4 2.25Up
Larval Salivary gland272 ± 84 of 4 4.63Up
Larval midgut22 ± 04 of 4 0.38Down
Larval tubule6 ± 11 of 4 0.10Down
Larval hindgut451 ± 214 of 4 7.69Up
Larval fat body13 ± 10 of 4 0.20Down
Larval trachea1005 ± 1074 of 417.11Up
Larval carcass620 ± 234 of 410.57Up
S2 cells (growing)6 ± 10 of 4 0.12Down
Whole fly58 ± 54 of 4

Looking for FBgn0035103. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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