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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0035104 through 18771 annotations produced 1 hits


Annotation Number : CG13875
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035104
Gbrowse : chr3L:180293-182535 (+) // 100.0 //
Probeset : 1623396_at
Accessions : protein= NP_612005;, nucleotide= NM_138161;
FlyMine data for FBgn0035104.
BDGP gene expression has embryonic in situ data for CG13875: 13 pix of staining in 8 body parts.
VDRC has 3 RNAi stocks for FBgn0035104 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 11 of 4 1.10None
Head11 30 of 4 2.20None
Eye45 14 of 4 8.47Up
Thoracicoabdominal ganglion8 11 of 4 1.50None
Salivary gland35 64 of 4 6.55Up
Crop19 14 of 4 3.50Up
Midgut2 00 of 4 0.50None
Tubule4 00 of 4 0.90None
Hindgut21 14 of 4 4.00Up
Heart5 13 of 4 1.00None
Fat body8 21 of 4 1.62None
Ovary2 00 of 4 0.50None
Testis2 00 of 4 0.40None
Male accessory glands2 10 of 4 0.50None
Virgin spermatheca9 03 of 4 1.77None
Mated spermatheca10 12 of 4 1.84None
Adult carcass11 20 of 4 2.10None
Larval CNS17 34 of 4 3.24Up
Larval Salivary gland14 24 of 4 2.72Up
Larval midgut3 00 of 4 0.55None
Larval tubule5 11 of 4 1.10None
Larval hindgut22 14 of 4 4.06Up
Larval fat body5 10 of 4 0.90None
Larval trachea15 24 of 4 2.91Up
Larval carcass21 44 of 4 4.00Up
S2 cells (growing)4 10 of 4 0.76None
Whole fly5 10 of 4

Looking for FBgn0035104. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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