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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035106 through 18771 annotations produced 1 hits



chr3L:188548-198587 (-) // 100.0 // (rhinoceros):

Annotation Number : CG7036
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1638999_at
Accessions : protein= , nucleotide= NP_612007; /// NP_995944;
Pathway : "0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from sequence or structural similarity /// 0007275 // multicellular organismal development //
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 ± 04 of 4 0.90None
Head10 ± 20 of 4 0.40Down
Eye20 ± 11 of 4 0.82None
Thoracicoabdominal ganglion13 ± 23 of 4 0.60Down
Salivary gland15 ± 30 of 4 0.64None
Crop15 ± 22 of 4 0.60Down
Midgut16 ± 23 of 4 0.70None
Tubule5 ± 00 of 4 0.20Down
Hindgut13 ± 22 of 4 0.50Down
Heart21 ± 30 of 4 0.85None
Fat body12 ± 20 of 4 0.51Down
Ovary92 ± 04 of 4 3.70Up
Testis18 ± 14 of 4 0.70None
Male accessory glands15 ± 20 of 4 0.60Down
Virgin spermatheca6 ± 10 of 4 0.25Down
Mated spermatheca9 ± 00 of 4 0.38Down
Adult carcass14 ± 10 of 4 0.60Down
Larval CNS17 ± 14 of 4 0.71None
Larval Salivary gland19 ± 43 of 4 0.77None
Larval midgut6 ± 20 of 4 0.26Down
Larval tubule18 ± 14 of 4 0.70None
Larval hindgut12 ± 23 of 4 0.50Down
Larval fat body16 ± 42 of 4 0.60None
Larval trachea16 ± 42 of 4 0.66None
Larval carcass12 ± 11 of 4 0.51Down
S2 cells (growing)29 ± 14 of 4 1.20None
Whole fly24 ± 24 of 4

Looking for FBgn0035106. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime