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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035107 through 18771 annotations produced 1 hits



mrityu (mri):

Annotation Number : CG1216
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035107
Gbrowse : chr3L:200179-202165 (+) // 100.0 //
Probeset : 1628487_s_at
Accessions : protein= NP_612008; /// NP_728484; /// NP_728485;, nucleotide= NM_138164; /// NM_167801; /// NM_167802;
Pathway : 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inf
Interpro : 0004370 // glycerol kinase activity // inferred from sequence or structural similarity /// 0004370 // glycerol kinase ac
FlyMine data for FBgn0035107.
BDGP gene expression has embryonic in situ data for CG1216: 4 pix of staining in 1 body parts.
BioGrid reports that CG1216 interacts with CG1216 CG14639 CG17806 CG4854 CG5650 CG7574 CG14254 CG14534 CG14643 CG14939 CG15693 CG15736 CG2009 CG2199 CG2519 CG32570 CG4532 CG5709 CG5738 CG5812 CG6593 CG6637 CG6948 CG7725 CG9242 CG9327 CG9894 CG12896 CG9924 .
TRiP has 2 RNAi stocks for FBgn0035107 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035107 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain287 ± 94 of 4 1.10None
Head200 ± 94 of 4 0.80Down
Eye161 ± 64 of 4 0.62Down
Thoracicoabdominal ganglion195 ± 94 of 4 0.70Down
Salivary gland215 ± 74 of 4 0.82Down
Crop257 ± 34 of 4 1.00None
Midgut147 ± 44 of 4 0.60Down
Tubule220 ± 44 of 4 0.80Down
Hindgut248 ± 24 of 4 1.00None
Heart332 ± 104 of 4 1.27Up
Fat body529 ± 224 of 4 2.03Up
Ovary373 ± 34 of 4 1.40Up
Testis134 ± 44 of 4 0.50Down
Male accessory glands185 ± 64 of 4 0.70Down
Virgin spermatheca687 ± 304 of 4 2.63Up
Mated spermatheca390 ± 514 of 4 1.49None
Adult carcass349 ± 104 of 4 1.30Up
Larval CNS392 ± 94 of 4 1.50Up
Larval Salivary gland327 ± 84 of 4 1.25Up
Larval midgut327 ± 424 of 4 1.25None
Larval tubule542 ± 74 of 4 2.10Up
Larval hindgut302 ± 134 of 4 1.16None
Larval fat body406 ± 374 of 4 1.60Up
Larval trachea258 ± 74 of 4 0.99None
Larval carcass288 ± 284 of 4 1.10None
S2 cells (growing)241 ± 44 of 4 0.92None
Whole fly261 ± 124 of 4

Looking for FBgn0035107. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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