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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035109 through 18771 annotations produced 1 hits



(CG13876):

Annotation Number : CG13876
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035109
Gbrowse : chr3L:206191-207112 (+) // 100.0 //
Probeset : 1638975_at
Accessions : protein= NP_612009;, nucleotide= NM_138165;
Interpro : 0005507 // copper ion binding // inferred from electronic annotation /// 0008131 // primary amine oxidase activity // in
FlyMine data for FBgn0035109.
VDRC has 3 RNAi stocks for FBgn0035109 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain27 14 of 4 0.70Down
Head31 24 of 4 0.80None
Eye44 24 of 4 1.20None
Thoracicoabdominal ganglion33 24 of 4 0.90None
Salivary gland35 34 of 4 0.97None
Crop36 14 of 4 1.00None
Midgut43 24 of 4 1.20None
Tubule30 14 of 4 0.80Down
Hindgut37 14 of 4 1.00None
Heart41 24 of 4 1.11None
Fat body46 94 of 4 1.27None
Ovary68 24 of 4 1.80Up
Testis49 34 of 4 1.30Up
Male accessory glands28 34 of 4 0.80None
Virgin spermatheca23 34 of 4 0.63Down
Mated spermatheca23 24 of 4 0.64Down
Adult carcass43 34 of 4 1.20None
Larval CNS45 24 of 4 1.24Up
Larval Salivary gland37 44 of 4 1.00None
Larval midgut48 54 of 4 1.31None
Larval tubule55 14 of 4 1.50Up
Larval hindgut41 14 of 4 1.11None
Larval fat body82 14 of 4 2.20Up
Larval trachea47 34 of 4 1.30Up
Larval carcass37 24 of 4 1.01None
S2 cells (growing)48 24 of 4 1.32Up
Whole fly37 24 of 4

Looking for FBgn0035109. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime