FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0035122 through 18771 annotations produced 1 hits

mitochondrial ribosomal protein L17 (mRpL17):

Annotation Number : CG13880
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035122
Gbrowse : chr3L:264781-265599 (+) // 100.0 //
Probeset : 1634013_at
Accessions : protein= NP_523870;, nucleotide= NM_079146;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005762 // mitochondrial large ribosomal subunit //
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0035122.
BDGP gene expression has embryonic in situ data for mRpL17: 4 pix of staining in 1 body parts.
BioGrid reports that CG13880 interacts with CG7641 .
VDRC has 3 RNAi stocks for FBgn0035122 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	370 ± 12	4 of 4	0.90	None
Head	262 ± 9	4 of 4	0.70	Down
Eye	211 ± 6	4 of 4	0.54	Down
Thoracicoabdominal ganglion	439 ± 12	4 of 4	1.10	None
Salivary gland	285 ± 11	4 of 4	0.73	Down
Crop	225 ± 12	4 of 4	0.60	Down
Midgut	232 ± 8	4 of 4	0.60	Down
Tubule	167 ± 6	4 of 4	0.40	Down
Hindgut	396 ± 8	4 of 4	1.00	None
Heart	241 ± 13	4 of 4	0.61	Down
Fat body	262 ± 44	4 of 4	0.67	Down
Ovary	573 ± 2	4 of 4	1.50	Up
Testis	83 ± 1	4 of 4	0.20	Down
Male accessory glands	235 ± 5	4 of 4	0.60	Down
Virgin spermatheca	124 ± 9	4 of 4	0.32	Down
Mated spermatheca	137 ± 6	4 of 4	0.35	Down
Adult carcass	245 ± 15	4 of 4	0.60	Down
Larval CNS	331 ± 16	4 of 4	0.84	Down
Larval Salivary gland	264 ± 15	4 of 4	0.67	Down
Larval midgut	142 ± 5	4 of 4	0.36	Down
Larval tubule	112 ± 4	4 of 4	0.30	Down
Larval hindgut	322 ± 39	4 of 4	0.82	None
Larval fat body	84 ± 2	4 of 4	0.20	Down
Larval trachea	234 ± 31	4 of 4	0.60	Down
Larval carcass	270 ± 36	4 of 4	0.69	Down
S2 cells (growing)	258 ± 7	4 of 4	0.66	Down
Whole fly	392 ± 18	4 of 4

Looking for FBgn0035122. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720