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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035132 through 18771 annotations produced 2 hits



Mth-like 10 (mthl10):

Annotation Number : CG17061
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035132
Gbrowse : chr3L:333474-336682 (-) // 100.0 //
Probeset : 1630665_at
Accessions : protein= NP_612030; /// NP_788446;, nucleotide= NM_138186; /// NM_176268;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0035132.
VDRC has 3 RNAi stocks for FBgn0035132 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 11 of 4 1.00None
Head8 20 of 4 1.20None
Eye8 11 of 4 1.23None
Thoracicoabdominal ganglion10 10 of 4 1.60None
Salivary gland12 50 of 4 1.86None
Crop54 54 of 4 8.00Up
Midgut18 20 of 4 2.70Up
Tubule8 00 of 4 1.30Up
Hindgut10 00 of 4 1.50None
Heart3 10 of 4 0.46None
Fat body24 62 of 4 3.63Up
Ovary6 00 of 4 1.00None
Testis7 20 of 4 1.10None
Male accessory glands21 20 of 4 3.20Up
Virgin spermatheca23 40 of 4 3.45Up
Mated spermatheca17 30 of 4 2.48Up
Adult carcass20 31 of 4 3.00Up
Larval CNS12 10 of 4 1.79Up
Larval Salivary gland14 30 of 4 2.08None
Larval midgut5 10 of 4 0.85None
Larval tubule11 20 of 4 1.70None
Larval hindgut18 12 of 4 2.65Up
Larval fat body10 50 of 4 1.50None
Larval trachea10 12 of 4 1.58None
Larval carcass13 10 of 4 1.95Up
S2 cells (growing)12 11 of 4 1.84None
Whole fly6 10 of 4



Mth-like 10 (mthl10):

Annotation Number : CG17061
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035132
Gbrowse : chr3L:333474-336682 (-) // 100.0 //
Probeset : 1623772_a_at
Accessions : protein= NP_612030; /// NP_788446;, nucleotide= NM_138186; /// NM_176268;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0035132.
VDRC has 3 RNAi stocks for FBgn0035132 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 04 of 4 0.60Down
Head28 14 of 4 1.20Up
Eye6 01 of 4 0.29Down
Thoracicoabdominal ganglion20 34 of 4 0.90None
Salivary gland9 51 of 4 0.39None
Crop235 224 of 410.10Up
Midgut118 24 of 4 5.10Up
Tubule12 04 of 4 0.50Down
Hindgut78 04 of 4 3.30Up
Heart11 14 of 4 0.50Down
Fat body9 33 of 4 0.42Down
Ovary13 04 of 4 0.60Down
Testis28 14 of 4 1.20Up
Male accessory glands17 33 of 4 0.70None
Virgin spermatheca5 10 of 4 0.24Down
Mated spermatheca4 00 of 4 0.19Down
Adult carcass26 24 of 4 1.10None
Larval CNS18 24 of 4 0.79Down
Larval Salivary gland15 03 of 4 0.65Down
Larval midgut91 94 of 4 3.93Up
Larval tubule84 44 of 4 3.60Up
Larval hindgut76 44 of 4 3.26Up
Larval fat body13 14 of 4 0.60Down
Larval trachea23 34 of 4 0.99None
Larval carcass44 64 of 4 1.89Up
S2 cells (growing)77 44 of 4 3.30Up
Whole fly23 14 of 4

Looking for FBgn0035132. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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