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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0035137 through 18771 annotations produced 1 hits



(CG1233):

Annotation Number : CG1233
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035137
Gbrowse : chr3L:361477-365681 (+) // 100.0 //
Probeset : 1625945_a_at
Accessions : protein= NP_612034; /// NP_728528;, nucleotide= NM_138190; /// NM_167833;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0035137.
BDGP gene expression has embryonic in situ data for CG1233: 12 pix of staining in 19 body parts.
Homophila reports that CG1233 is a close match (5e-12) to human gene SLUG;SNAI2;WS2D (NP_003059), a gene associated with Melanoma metastasis, modification of (1);Piebaldism, 172800 (3);Waardenburg syndrome, type IID, 608890 (3).
TRiP has 1 RNAi stocks for FBgn0035137 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035137 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain83 ± 14 of 4 1.00None
Head73 ± 24 of 4 0.90None
Eye51 ± 34 of 4 0.63Down
Thoracicoabdominal ganglion59 ± 24 of 4 0.70Down
Salivary gland149 ± 114 of 4 1.82Up
Crop91 ± 34 of 4 1.10None
Midgut139 ± 54 of 4 1.70Up
Tubule105 ± 34 of 4 1.30Up
Hindgut99 ± 24 of 4 1.20Up
Heart93 ± 44 of 4 1.14None
Fat body132 ± 134 of 4 1.61Up
Ovary145 ± 94 of 4 1.80Up
Testis54 ± 34 of 4 0.70Down
Male accessory glands91 ± 54 of 4 1.10None
Virgin spermatheca163 ± 114 of 4 1.99Up
Mated spermatheca118 ± 64 of 4 1.44Up
Adult carcass83 ± 34 of 4 1.00None
Larval CNS78 ± 64 of 4 0.96None
Larval Salivary gland73 ± 84 of 4 0.89None
Larval midgut143 ± 44 of 4 1.74Up
Larval tubule177 ± 94 of 4 2.20Up
Larval hindgut87 ± 74 of 4 1.06None
Larval fat body88 ± 34 of 4 1.10None
Larval trachea49 ± 34 of 4 0.60Down
Larval carcass72 ± 44 of 4 0.88None
S2 cells (growing)105 ± 24 of 4 1.29Up
Whole fly82 ± 34 of 4

Looking for FBgn0035137. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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