FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0035140 through 18771 annotations produced 1 hits

(CG17180):

Annotation Number : CG17180
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035140
Gbrowse : chr3L:540850-542150 (+) // 100.0 //
Probeset : 1636726_at
Accessions : protein= NP_612037;, nucleotide= NM_138193;
FlyMine data for FBgn0035140.
VDRC has 2 RNAi stocks for FBgn0035140 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	101 ± 0	4 of 4	3.80	Up
Head	49 ± 2	4 of 4	1.90	Up
Eye	121 ± 9	4 of 4	4.57	Up
Thoracicoabdominal ganglion	91 ± 2	4 of 4	3.40	Up
Salivary gland	29 ± 3	4 of 4	1.12	None
Crop	33 ± 1	4 of 4	1.30	Up
Midgut	38 ± 2	4 of 4	1.40	Up
Tubule	19 ± 1	2 of 4	0.70	Down
Hindgut	35 ± 1	4 of 4	1.30	Up
Heart	32 ± 3	4 of 4	1.23	None
Fat body	26 ± 3	4 of 4	1.01	None
Ovary	34 ± 5	4 of 4	1.30	None
Testis	85 ± 2	4 of 4	3.20	Up
Male accessory glands	23 ± 1	4 of 4	0.90	None
Virgin spermatheca	29 ± 2	4 of 4	1.10	None
Mated spermatheca	27 ± 2	4 of 4	1.05	None
Adult carcass	25 ± 2	3 of 4	1.00	None
Larval CNS	71 ± 2	4 of 4	2.69	Up
Larval Salivary gland	33 ± 0	4 of 4	1.27	Up
Larval midgut	51 ± 5	4 of 4	1.94	Up
Larval tubule	49 ± 2	4 of 4	1.90	Up
Larval hindgut	42 ± 2	4 of 4	1.61	Up
Larval fat body	43 ± 7	4 of 4	1.70	None
Larval trachea	31 ± 6	4 of 4	1.20	None
Larval carcass	25 ± 2	4 of 4	0.95	None
S2 cells (growing)	19 ± 1	4 of 4	0.73	Down
Whole fly	26 ± 1	4 of 4

Looking for FBgn0035140. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720